ID A0A0Q3M590_BRADI Unreviewed; 1009 AA.
AC A0A0Q3M590;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 42.
DE RecName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 {ECO:0008006|Google:ProtNLM};
GN Name=100838307 {ECO:0000313|EnsemblPlants:KQJ99685};
GN ORFNames=BRADI_3g44690v3 {ECO:0000313|EMBL:KQJ99685.1};
OS Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX NCBI_TaxID=15368 {ECO:0000313|EMBL:KQJ99685.1};
RN [1] {ECO:0000313|EMBL:KQJ99685.1, ECO:0000313|EnsemblPlants:KQJ99685}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ99685.1,
RC ECO:0000313|EnsemblPlants:KQJ99685};
RX PubMed=20148030; DOI=10.1038/nature08747;
RG International Brachypodium Initiative;
RT "Genome sequencing and analysis of the model grass Brachypodium
RT distachyon.";
RL Nature 463:763-768(2010).
RN [2] {ECO:0000313|EMBL:KQJ99685.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ99685.1};
RG The International Brachypodium Initiative;
RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT "WGS assembly of Brachypodium distachyon.";
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQJ99685}
RP IDENTIFICATION.
RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:KQJ99685};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR EMBL; CM000882; KQJ99685.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0Q3M590; -.
DR EnsemblPlants; KQJ99685; KQJ99685; BRADI_3g44690v3.
DR Gramene; KQJ99685; KQJ99685; BRADI_3g44690v3.
DR Proteomes; UP000008810; Chromosome 3.
DR ExpressionAtlas; A0A0Q3M590; baseline.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0016818; F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd18008; DEXDc_SHPRH-like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR014905; HIRAN.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR018957; Znf_C3HC4_RING-type.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR45626:SF45; DNA REPAIR PROTEIN RAD5A; 1.
DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF08797; HIRAN; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF00097; zf-C3HC4; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00910; HIRAN; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000008810};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 387..603
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 774..814
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 847..1004
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 46..104
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 49..93
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1009 AA; 111400 MW; 45B9C5544817D675 CRC64;
MGKEDQVATV RAVLGEGTPE MDIIRALHMA GDDPTKAINI LLDFHHKLPA PPLPSPSPSQ
SPPPVKPTNP PVESIPPPKT PSQSKPAADK PRPNPAPTGG GEHWWLVGSA EMAGLSTCKG
RRIAAGDPVT FSFPNSAAAA APGKGRPGRL ALASCTSEIM RFSTPHNGEV GRIPNEWARC
LLPLLKEGKI KVEGQCKSAP EVLSIMDTVL LCASVYINSS MFRDQKQSLP KAARVATDDS
TFHPLPALFK VIGLAPFKKA AFTPEDLYSR KRPIERKSST GLPATKLTSE KLRLSCGGNE
DDPGEGAVSD SDLDDIIGIS DSSALECDLR PYQKQALHWM LQLEKGSSSQ DAATTLHPCW
EAYKLEDKRE LVLYVNVFSG DATTEFPSTL QLARGGILAD AMGLGKTIMT ISLLLSDSSK
GLITTHHSTQ ISREASGLGE IHIKSQNPVK NLASPFSFSK LKKLKTPLVG GGNLIICPMT
LLSQWKAEIE AHTKPNTMNI YVHYGQSRPK EASFIGQNDI VLTTYGVVAS EFSTESSTEN
GGLYSVHWFR VVLDEAHMIK SSKSLISQAA AALTADRRWC LTGTPIQNNL EDIYSLFRFL
RVEPWRNWAL WYKLVQKPFE EGDERGLKLV QTILKRVMLR RTKNSTDKEG RPILTLPPAT
IEVKYCDLSE PEKDFYEALF RRSKVKFDQF VEQGKVLHNY ASILELLLRL RQCCDHPFLV
MSRGDTQEYA DLNKLAKRFL HGGNSVVNGN SSSLPSKAYI EEVVQELQKG EGECPICLEA
FEDAVLTPCA HRLCRECILS SWQSTAAGLC PVCRKSMSKQ DLITAPTDSR FQVDVEKNWI
ESSKISFLLQ ELESLRSSGA KSIVFSQWTA FLDLLQIPLS RHGISFARLD GTLNLQQREK
VIKEFSEDKS ILVLLMSLKA GGVGINLTAA SNAFVMDPWW NPAVEEQAVM RIHRIGQTKS
VSIKRFIVKG TVEERMEAVQ ARKQRMISGA LTDQEVRTAR IEELKMLFS
//
