ID A0A0Q3MV54_BRADI Unreviewed; 504 AA.
AC A0A0Q3MV54;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 35.
DE RecName: Full=TRAFD1/XAF1 zinc finger domain-containing protein {ECO:0000259|Pfam:PF21366};
GN Name=100845492 {ECO:0000313|EnsemblPlants:KQK08206};
GN ORFNames=BRADI_2g40480v3 {ECO:0000313|EMBL:KQK08206.1};
OS Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX NCBI_TaxID=15368 {ECO:0000313|EMBL:KQK08206.1};
RN [1] {ECO:0000313|EMBL:KQK08206.1, ECO:0000313|EnsemblPlants:KQK08206}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK08206.1,
RC ECO:0000313|EnsemblPlants:KQK08206};
RX PubMed=20148030; DOI=10.1038/nature08747;
RG International Brachypodium Initiative;
RT "Genome sequencing and analysis of the model grass Brachypodium
RT distachyon.";
RL Nature 463:763-768(2010).
RN [2] {ECO:0000313|EMBL:KQK08206.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQK08206.1};
RG The International Brachypodium Initiative;
RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT "WGS assembly of Brachypodium distachyon.";
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQK08206}
RP IDENTIFICATION.
RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:KQK08206};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
CC -!- SIMILARITY: Belongs to the UFD1 family.
CC {ECO:0000256|ARBA:ARBA00006043}.
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DR EMBL; CM000881; KQK08206.1; -; Genomic_DNA.
DR EMBL; CM000881; PNT72156.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0Q3MV54; -.
DR EnsemblPlants; KQK08206; KQK08206; BRADI_2g40480v3.
DR EnsemblPlants; PNT72156; PNT72156; BRADI_2g40480v3.
DR Gramene; KQK08206; KQK08206; BRADI_2g40480v3.
DR Gramene; PNT72156; PNT72156; BRADI_2g40480v3.
DR Proteomes; UP000008810; Chromosome 2.
DR ExpressionAtlas; A0A0Q3MV54; baseline and differential.
DR GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; IEA:InterPro.
DR Gene3D; 2.60.120.380; -; 1.
DR Gene3D; 3.10.330.10; -; 1.
DR Gene3D; 2.40.40.50; Ubiquitin fusion degradation protein UFD1, N-terminal domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR049439; TRAFD1-XIAF1_Znf.
DR InterPro; IPR004854; Ufd1-like.
DR InterPro; IPR042299; Ufd1-like_Nn.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR12555; UBIQUITIN FUSION DEGRADATON PROTEIN 1; 1.
DR PANTHER; PTHR12555:SF13; UBIQUITIN RECOGNITION FACTOR IN ER-ASSOCIATED DEGRADATION PROTEIN 1; 1.
DR Pfam; PF21366; TRAFD1-XIAF1_ZnF; 1.
DR Pfam; PF03152; UFD1; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008810};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786}.
FT DOMAIN 467..496
FT /note="TRAFD1/XAF1 zinc finger"
FT /evidence="ECO:0000259|Pfam:PF21366"
SQ SEQUENCE 504 AA; 55800 MW; 133E19488B82980F CRC64;
MEEVMQLGKG ISFSHMFEAL RYDGPGDKIK LPPSSFKELS DEGALDKGPM YFRLSKVRDR
VPGASQYQGP EEATCCGVLE FTAREGSAEL PPHVWNNLFQ SDIPDVPLIE VRYASLPKGT
YAKLKPEGVG FSDLPNHRAV LETALRNHAT LSENDVVVVN YGQLQYKLRV LELKPASSVS
VLETDVEVDI EGPDSVLDNE ENQHVLVPLQ IGKVESGVLE EGKFRYYKFY VEEGTSEKVA
SGHANIEVKI EADTSGGDTD IYVSRHPLVF PTQHRHEWSS HEMGSKVLIL KPRDVTLVSG
TYSIGVYGFK GTSNFQLSVA IKDVISSQRI GEQASASSTV NGDSVVCKNC KRHVSGRTSV
LHEAYCVRHN VACMHDGCGV VLRKEEAADH VHCSKCGQAF QQREMEKHMK VFHEPLHCPC
GVVLEKEDMV QHQSSTCPFR LIVCRFCGDT VQAGGQPLDV RDRLRNMCEH ESICGSRTAP
CDSCGRSVML KEMDIHAIAV HQKS
//