ID A0A0Q3PFH4_BRADI Unreviewed; 1247 AA.
AC A0A0Q3PFH4;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 08-NOV-2023, entry version 31.
DE RecName: Full=USP domain-containing protein {ECO:0000259|PROSITE:PS50235};
GN ORFNames=BRADI_4g15430v3 {ECO:0000313|EMBL:KQJ88113.1};
OS Brachypodium distachyon (Purple false brome) (Trachynia distachya).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Pooideae; Stipodae; Brachypodieae; Brachypodium.
OX NCBI_TaxID=15368 {ECO:0000313|EMBL:KQJ88113.1};
RN [1] {ECO:0000313|EMBL:KQJ88113.1, ECO:0000313|EnsemblPlants:KQJ88113}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ88113.1,
RC ECO:0000313|EnsemblPlants:KQJ88113};
RX PubMed=20148030; DOI=10.1038/nature08747;
RG International Brachypodium Initiative;
RT "Genome sequencing and analysis of the model grass Brachypodium
RT distachyon.";
RL Nature 463:763-768(2010).
RN [2] {ECO:0000313|EMBL:KQJ88113.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Bd21 {ECO:0000313|EMBL:KQJ88113.1};
RG The International Brachypodium Initiative;
RA Lucas S., Harmon-Smith M., Lail K., Tice H., Grimwood J., Bruce D.,
RA Barry K., Shu S., Lindquist E., Wang M., Pitluck S., Vogel J.P.,
RA Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W.;
RT "WGS assembly of Brachypodium distachyon.";
RL Submitted (JUN-2017) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EnsemblPlants:KQJ88113}
RP IDENTIFICATION.
RC STRAIN=cv. Bd21 {ECO:0000313|EnsemblPlants:KQJ88113};
RG EnsemblPlants;
RL Submitted (AUG-2018) to UniProtKB.
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DR EMBL; CM000883; KQJ88113.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0Q3PFH4; -.
DR EnsemblPlants; KQJ88113; KQJ88113; BRADI_4g15430v3.
DR Gramene; KQJ88113; KQJ88113; BRADI_4g15430v3.
DR InParanoid; A0A0Q3PFH4; -.
DR OrthoDB; 227085at2759; -.
DR Proteomes; UP000008810; Chromosome 4.
DR ExpressionAtlas; A0A0Q3PFH4; baseline and differential.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0004843; F:cysteine-type deubiquitinase activity; IEA:InterPro.
DR CDD; cd02257; Peptidase_C19; 1.
DR Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR InterPro; IPR025315; DUF4220.
DR InterPro; IPR007658; DUF594.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR001394; Peptidase_C19_UCH.
DR InterPro; IPR028889; USP_dom.
DR PANTHER; PTHR31325; OS01G0798800 PROTEIN-RELATED; 1.
DR PANTHER; PTHR31325:SF139; USP DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF13968; DUF4220; 1.
DR Pfam; PF04578; DUF594; 1.
DR Pfam; PF00443; UCH; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
DR PROSITE; PS50235; USP_3; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000008810};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 20..45
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 376..403
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 423..439
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 865..1232
FT /note="USP"
FT /evidence="ECO:0000259|PROSITE:PS50235"
FT REGION 250..275
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 810..830
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1035..1082
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 253..268
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 811..829
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1054..1078
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1247 AA; 141866 MW; 828A5A5E1B4111C9 CRC64;
MVNATSLVKS IFTMPTENTY ILFRIELLVV VSTVLFLGMS ILDIFRSGFH SSIIKAILSI
VDSVSDSIVL YVMGAMQIAP FKNQLFPVWA IVLVGFRHSS DFISGYGIQD KDGRRFIEWK
NVVKLLGVAF LNKTRGSMFV YPLWSLWCLQ ILRSKYRMVA RQMAFKSVWH GKSSQLVSEY
MRTDTQCENF KLEDCKADTM EGYRYLVYGE TRQHIVLKKP RYVLHMDTNP EETRIQAKAK
AKAARAKARH KTQAAKVNST SAQPQRENGT RPAKPLIKPS PYSLITLDKI WQCDGALLQT
GSTQGDKFKD LSLAFSLSRL LRCRLEDMSL HKDSVPITKN LIMLRIIREE AKRAFMVMEL
EMSFLNDYFN TRYPMVFWTG FLSLHLSFIL SAATFAVACW LFVDILRVYK THKDEVSHVI
NGVNVDMVIT LIFMLFTVFK EVWEMAAYYL SDWARLLLAS TYVRWNRSYV RNYFTENFIG
SFFTSKIADS RWHGVLDQYA FLQSYDDSPS AWNFMRKFCT GAIPKKDEGA KLSEPIGIPE
CVKPAILVTL RSMDLTRAHL LDVIPSLLAE SRDQYRWACF ELPTSSHIIL VWHIATSLCE
IKFAQERYID LTNPGFPLNA LSYLTSFCHC CCCSPGPYLV NENMLDGDLK TRYTVANSLS
RYCAYLLISK PDLLPDSFLV PKMIFQETVK DARRILKNSD SLEKRYKTLV DKGDTLPQHT
TNSKENINIV QKGAKLAKEL MREDEESRWE ILAGVWADLL VHIAPSWNAT AHKNCLESGG
ELITHIWALL WHCGIEKSML WPVEGVPRNN APEAHQNNNA ENNSAKPADQ WQAAGAIDRD
DNHGKVTAAT VDGVSFVNGD SHLIRGMQNL GNTCYFNALQ GLLALGELRI KMLEQNPPEG
SLLWEFKKLL EESTGGANGA GGTLMIENLF SVMSSTYPDF KVGVTEDSNH LLGSFLDGLN
MEEPTMVKSL FRGEVAKYVY SKECVHTSVT PEVLDLSLAI PSKEHVSVED CLDLYASGEV
DDWYCTKCSA AARNASSNQK DTTVDEDHTQ QSDSAAHQNE QSSHPDQQQT STPNQDRGKL
PMLNGDVHQM EQSHDKHKEE EKKYRAAKVN IRIMKAPTLL TIQLKRFDYV RHGRPEKLDE
HVSIQEMLNI TKYMDPRCVA NEDYIYRLVA IIVHEGPKLS EGHNYSYVRG NSTGQEHGLT
DTWFSANDEK VEKVSLEEVL ECQAYILFYE RVDQSKVIFK ATHWIHL
//
