ID A0A0Q4RKQ1_9BURK Unreviewed; 788 AA.
AC A0A0Q4RKQ1;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE SubName: Full=Lysine decarboxylase {ECO:0000313|EMBL:KQO16035.1};
GN ORFNames=ASF16_15685 {ECO:0000313|EMBL:KQO16035.1};
OS Acidovorax sp. Leaf78.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Acidovorax.
OX NCBI_TaxID=1736237 {ECO:0000313|EMBL:KQO16035.1, ECO:0000313|Proteomes:UP000051234};
RN [1] {ECO:0000313|Proteomes:UP000051234}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Leaf78 {ECO:0000313|Proteomes:UP000051234};
RA Garrido-Oter R., Mueller D.B.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000051234}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Leaf78 {ECO:0000313|Proteomes:UP000051234};
RA Vorholt J.;
RT "Functional overlap of the Arabidopsis leaf and root microbiotas.";
RL Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-I family.
CC {ECO:0000256|ARBA:ARBA00010671}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KQO16035.1}.
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DR EMBL; LMLZ01000023; KQO16035.1; -; Genomic_DNA.
DR RefSeq; WP_056172149.1; NZ_LMLZ01000023.1.
DR AlphaFoldDB; A0A0Q4RKQ1; -.
DR STRING; 1736237.ASF16_15685; -.
DR OrthoDB; 9761189at2; -.
DR Proteomes; UP000051234; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0016831; F:carboxy-lyase activity; IEA:InterPro.
DR GO; GO:0006520; P:amino acid metabolic process; IEA:InterPro.
DR Gene3D; 3.40.50.2300; -; 1.
DR Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 1.
DR Gene3D; 3.90.100.10; Orn/Lys/Arg decarboxylase, C-terminal domain; 1.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR InterPro; IPR005308; OKR_de-COase_N.
DR InterPro; IPR011193; Orn/lys/arg_de-COase.
DR InterPro; IPR000310; Orn/Lys/Arg_deCO2ase_major_dom.
DR InterPro; IPR008286; Prn/Lys/Arg_de-COase_C.
DR InterPro; IPR036633; Prn/Lys/Arg_de-COase_C_sf.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR PANTHER; PTHR45229:SF3; BIODEGRADATIVE ARGININE DECARBOXYLASE; 1.
DR PANTHER; PTHR45229; CONSTITUTIVE ORNITHINE DECARBOXYLASE; 1.
DR Pfam; PF01276; OKR_DC_1; 1.
DR Pfam; PF03711; OKR_DC_1_C; 1.
DR Pfam; PF03709; OKR_DC_1_N; 1.
DR PIRSF; PIRSF009393; Orn_decarb; 1.
DR SUPFAM; SSF55904; Ornithine decarboxylase C-terminal domain; 1.
DR SUPFAM; SSF53383; PLP-dependent transferases; 1.
DR PROSITE; PS00703; OKR_DC_1; 1.
PE 3: Inferred from homology;
KW Pyridoxal phosphate {ECO:0000256|ARBA:ARBA00022898,
KW ECO:0000256|PIRSR:PIRSR009393-1}.
FT DOMAIN 392..406
FT /note="Orn/Lys/Arg decarboxylases family 1 pyridoxal-P
FT attachment site"
FT /evidence="ECO:0000259|PROSITE:PS00703"
FT MOD_RES 397
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR009393-1"
SQ SEQUENCE 788 AA; 88553 MW; CD7449649C5292DC CRC64;
MKFRFPIIII DEDYRSENTS GLGIRALAQA IEAEGFEVVG VTSYGDLSQF AQQQSRASAF
ILSIDDEEFT VGEGLDPIVL SLRNFIGEVR RKNTEVPIYV HGETKTSRHL PNDILRELHG
FIHMFEDTPE FVARHIIREA KSYLESVQPP FFKALLDYAE DGSYSWHCPG HSGGVAFLKS
PVGQMYHQFY GENMLRADVC NAVEELGQLL DHNGAIGESE RNAARIFNAD HCFFVTNGTS
TSNKMVWHHT VAPGDVVVVD RNCHKSILHS IIMTGAIPVF MKPTRNHFGI IGPIPQSEFE
PAAIQAKIKA NPLLKGVDAK NVKPRVLTLT QSTYDGVLYN TETIKGMLDG YVENLHFDEA
WLPHAAFHPF YGTYHAMGKK RTRPKHSVTY ATQSIHKLLA GISQASHVLV QDSQTTKLDR
HLFNEAYLMH TSTSPQYSII ASCDVAAAMM EPPGGTALVE ESILEALDFR RAMRQIENDF
GKKDWWFKVW GPDKLVEEGM GRAEDWIIRS DSKSKKAGAK WHGFGQLADG FNMLDPIKST
IVTPGLNLDG KFDKTGIPAS IVTKYLAEHG VVVEKTGLYS FFVMFTIGIT KGRWNTLLTA
LQQFKDDYEK NQPMWRILPE FCQQHKRYER MGLQDLCQHV HEMYAKYDIA RLTTEMYLSD
LTPAMKPSDA YAHIAHRKTD RVEIDELEGR ITVGLVTPYP PGIPLLIPGE VFNKKIVDYL
KFAREFAKLC PGFETDIHGL VEVEDENGQV RYYADCVADE KKGKNPKPLA TAKNLVQVGG
DGPYGRTI
//
