ID A0A0Q5Z9C6_9BURK Unreviewed; 755 AA.
AC A0A0Q5Z9C6;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE SubName: Full=Lysine decarboxylase {ECO:0000313|EMBL:KQT10811.1};
GN ORFNames=ASG30_08350 {ECO:0000313|EMBL:KQT10811.1};
OS Ramlibacter sp. Leaf400.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Ramlibacter.
OX NCBI_TaxID=1736365 {ECO:0000313|EMBL:KQT10811.1, ECO:0000313|Proteomes:UP000051173};
RN [1] {ECO:0000313|EMBL:KQT10811.1, ECO:0000313|Proteomes:UP000051173}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Leaf400 {ECO:0000313|EMBL:KQT10811.1,
RC ECO:0000313|Proteomes:UP000051173};
RA Gilbert D.G.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:KQT10811.1, ECO:0000313|Proteomes:UP000051173}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Leaf400 {ECO:0000313|EMBL:KQT10811.1,
RC ECO:0000313|Proteomes:UP000051173};
RA Schulze-Lefert P.;
RT "Functional overlap of the Arabidopsis leaf and root microbiotas.";
RL Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-I family.
CC {ECO:0000256|ARBA:ARBA00010671}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KQT10811.1}.
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DR EMBL; LMQL01000010; KQT10811.1; -; Genomic_DNA.
DR RefSeq; WP_055896672.1; NZ_LMQL01000010.1.
DR AlphaFoldDB; A0A0Q5Z9C6; -.
DR STRING; 1736365.ASG30_08350; -.
DR OrthoDB; 9761189at2; -.
DR Proteomes; UP000051173; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0016831; F:carboxy-lyase activity; IEA:InterPro.
DR GO; GO:0006520; P:amino acid metabolic process; IEA:InterPro.
DR Gene3D; 3.40.50.2300; -; 1.
DR Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 1.
DR Gene3D; 3.90.100.10; Orn/Lys/Arg decarboxylase, C-terminal domain; 1.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR InterPro; IPR005308; OKR_de-COase_N.
DR InterPro; IPR011193; Orn/lys/arg_de-COase.
DR InterPro; IPR000310; Orn/Lys/Arg_deCO2ase_major_dom.
DR InterPro; IPR008286; Prn/Lys/Arg_de-COase_C.
DR InterPro; IPR036633; Prn/Lys/Arg_de-COase_C_sf.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR PANTHER; PTHR45229:SF3; BIODEGRADATIVE ARGININE DECARBOXYLASE; 1.
DR PANTHER; PTHR45229; CONSTITUTIVE ORNITHINE DECARBOXYLASE; 1.
DR Pfam; PF01276; OKR_DC_1; 1.
DR Pfam; PF03711; OKR_DC_1_C; 1.
DR Pfam; PF03709; OKR_DC_1_N; 1.
DR PIRSF; PIRSF009393; Orn_decarb; 1.
DR SUPFAM; SSF55904; Ornithine decarboxylase C-terminal domain; 1.
DR SUPFAM; SSF53383; PLP-dependent transferases; 1.
DR PROSITE; PS00703; OKR_DC_1; 1.
PE 3: Inferred from homology;
KW Pyridoxal phosphate {ECO:0000256|ARBA:ARBA00022898,
KW ECO:0000256|PIRSR:PIRSR009393-1};
KW Reference proteome {ECO:0000313|Proteomes:UP000051173}.
FT DOMAIN 392..406
FT /note="Orn/Lys/Arg decarboxylases family 1 pyridoxal-P
FT attachment site"
FT /evidence="ECO:0000259|PROSITE:PS00703"
FT MOD_RES 397
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR009393-1"
SQ SEQUENCE 755 AA; 84634 MW; 5F966E2DB8BE06DB CRC64;
MKFRFPIVII DEDYRSENTS GLGIRALAQA IEAEGMEVLG ATSYGDLAQF AQQQSRASAF
ILSIDDEEFT SGPDPDPAVL NLRNFIGEVR RKNSDVPIYL YGETKTSQHL PNDVLRELHG
FIHMYEDTPE FMARHIIREA KSYLEGIQPP FFRALLDYAE DGSYSWHCPG HSGGVAFLKS
PIGQMFHQFF GENMLRADVC NAVDELGQLL DHTGPVAASE RNAARIFNAD HCFFVTNGTS
TSNKMVWHHT VAPGDVVVVD RNCHKSILHS IIMTGAIPVF MKPTRNHFGI IGPIPQSEFT
PEAIKAKIRA NPLLAGVDPE QVKPRIMTLT QSTYDGVLYN TETIKGMLDG YVDALHFDEA
WLPHACFHPF YGAFHAMGKK RARPEKSLVY ATQSIHKLLA GISQASHVLV QDAKNNKLDR
HLFNEAFLMH TSTSPQYSII ASCDVAAAMM EPPGGTALVE ESIQEALDFR RAMRKVDQEY
GKDWWFKVWG PDRLAESGIG RADDWIIKGE ARAAKWHGFG NLAEGFNMLD PIKSTVVTPG
LDLNGKFAKT GIPASIVTRF LAEHGIIVEK TGLYSFFIMF TIGITKGRWN TLLTALQQFK
DDYARNQPMW RILPEFCAQH PRYERMGLAD LCQHVHEMYA KYDIARLTTD MYLSDLTPAM
KPSDAYAHIA HRKTERVEID ELEGRVTTSL VTPYPPGIPL LIPGEVFNRK IVDYLKFSRE
FNASCPGFET DIHGLVEEVG ADGKTRYYAD CVRAS
//
