ID A0A0Q6ZES7_9BRAD Unreviewed; 704 AA.
AC A0A0Q6ZES7;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 30.
DE SubName: Full=Peptidoglycan-binding protein {ECO:0000313|EMBL:KQW21901.1};
GN ORFNames=ASC80_00350 {ECO:0000313|EMBL:KQW21901.1};
OS Afipia sp. Root123D2.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Nitrobacteraceae; Afipia.
OX NCBI_TaxID=1736436 {ECO:0000313|EMBL:KQW21901.1, ECO:0000313|Proteomes:UP000051348};
RN [1] {ECO:0000313|EMBL:KQW21901.1, ECO:0000313|Proteomes:UP000051348}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Root123D2 {ECO:0000313|EMBL:KQW21901.1,
RC ECO:0000313|Proteomes:UP000051348};
RA Gilbert D.G.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:KQW21901.1, ECO:0000313|Proteomes:UP000051348}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Root123D2 {ECO:0000313|EMBL:KQW21901.1,
RC ECO:0000313|Proteomes:UP000051348};
RA Schulze-Lefert P.;
RT "Functional overlap of the Arabidopsis leaf and root microbiotas.";
RL Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SIMILARITY: Belongs to the YkuD family.
CC {ECO:0000256|ARBA:ARBA00005992}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KQW21901.1}.
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DR EMBL; LMDP01000001; KQW21901.1; -; Genomic_DNA.
DR RefSeq; WP_056291751.1; NZ_LMDP01000001.1.
DR AlphaFoldDB; A0A0Q6ZES7; -.
DR STRING; 1736436.ASC80_00350; -.
DR OrthoDB; 9778545at2; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000051348; Unassembled WGS sequence.
DR GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR Gene3D; 1.10.101.10; PGBD-like superfamily/PGBD; 1.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR045380; LD_TPept_scaffold_dom.
DR InterPro; IPR002477; Peptidoglycan-bd-like.
DR InterPro; IPR036365; PGBD-like_sf.
DR InterPro; IPR036366; PGBDSf.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR41533:SF2; BLR7131 PROTEIN; 1.
DR PANTHER; PTHR41533; L,D-TRANSPEPTIDASE HI_1667-RELATED; 1.
DR Pfam; PF01471; PG_binding_1; 1.
DR Pfam; PF20142; Scaffold; 1.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF47090; PGBD-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000051348};
KW Signal {ECO:0000256|SAM:SignalP};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT SIGNAL 1..33
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 34..704
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5006299970"
FT DOMAIN 173..306
FT /note="L,D-transpeptidase scaffold"
FT /evidence="ECO:0000259|Pfam:PF20142"
FT DOMAIN 351..394
FT /note="Peptidoglycan binding-like"
FT /evidence="ECO:0000259|Pfam:PF01471"
FT DOMAIN 428..573
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
FT REGION 51..132
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 102..116
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 704 AA; 76290 MW; 7F8CC1EF4FE58B12 CRC64;
MRNYLNRRSG FDRTLAAIAA TFLSIGAASL AHADPAKTSA DLAIDAAVPM PEPANVPPPT
AADFNPVAPV ASEAPKTTEA PKTTEAPKTA ETPAADTSKA PAATATAPSS APPANETATA
PAAAPAATPS AAASPAEATS SIAAADQPFA DKLRDLVTTK SAKYFDRKAE RVAVEAFYKD
RNYAPLWTAG SAPSAQANGA ISRLKDAASD GLDPADYPVP NFAAANTPEA QAEAELKITA
SILDYARHAQ AGRMHWSQVS GDILYPEHNP EPAEVLVNVS TAKDASAALD SYNPPSRDYQ
ALKAKLAELR GVTETPQHKF EDGATLRYVK PRKGSDAEPM DDPRVPALRA RLGITENPND
THYDATVDAA VRKFQAQNGL KADGIVAQNT IRALNGERKD RKVDIVRVNM ERLRWLPRHL
GAKSLGDAYV ILNIPDYSLK VMHNGKQAWK TRVVVGKVGK HATPLLTETM KYITVNPTWN
VPPSIIYNEY LPALQQDPTV LDRMGLKMSR NSDGSIRISQ PPGEANALGR IRFNFPNKFL
VYQHDTPDKN LFAKETRAYS HGCMRVQNPD QYAATLLGIA LPKENYTPEK IRSMYGRGEV
NINLPTPIPV NIVYQTAFVD DAGKLEFRND IYGRDAKMIS LLNGSGKNLE TVIAHSQPTY
TRPTNVRVPG ESFADSSGPN LFEMLFGGGR PQREEPQTRR RVYR
//