ID A0A0Q9LIT9_9MICO Unreviewed; 428 AA.
AC A0A0Q9LIT9;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 39.
DE SubName: Full=RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KRE53760.1};
GN ORFNames=ASG70_11690 {ECO:0000313|EMBL:KRE53760.1};
OS Phycicoccus sp. Soil748.
OC Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Intrasporangiaceae;
OC Phycicoccus.
OX NCBI_TaxID=1736397 {ECO:0000313|EMBL:KRE53760.1, ECO:0000313|Proteomes:UP000051855};
RN [1] {ECO:0000313|Proteomes:UP000051855}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Soil748 {ECO:0000313|Proteomes:UP000051855};
RA Garrido-Oter R., Bai Y.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:KRE53760.1, ECO:0000313|Proteomes:UP000051855}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Soil748 {ECO:0000313|EMBL:KRE53760.1,
RC ECO:0000313|Proteomes:UP000051855};
RA Schulze-Lefert P.;
RT "Functional overlap of the Arabidopsis leaf and root microbiotas.";
RL Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRE53760.1}.
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DR EMBL; LMSC01000009; KRE53760.1; -; Genomic_DNA.
DR RefSeq; WP_056884530.1; NZ_LMSC01000009.1.
DR AlphaFoldDB; A0A0Q9LIT9; -.
DR STRING; 1736397.ASG70_11690; -.
DR Proteomes; UP000051855; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR GO; GO:0050896; P:response to stimulus; IEA:UniProt.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR046531; DUF6596.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR47756:SF2; BLL6612 PROTEIN; 1.
DR PANTHER; PTHR47756; BLL6612 PROTEIN-RELATED; 1.
DR Pfam; PF20239; DUF6596; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF08281; Sigma70_r4_2; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 16..80
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 118..170
FT /note="RNA polymerase sigma factor 70 region 4 type 2"
FT /evidence="ECO:0000259|Pfam:PF08281"
FT DOMAIN 188..288
FT /note="DUF6596"
FT /evidence="ECO:0000259|Pfam:PF20239"
SQ SEQUENCE 428 AA; 46421 MW; 1C6F72598D6D9CE1 CRC64;
MPGETPTVAA ITTAWRRESA RIVGALTRMT RDVELAEDLA QDALVAALEQ WPLTGVPINP
AAWLMTTAKR RGIDHFRRAD NLRRKTEELG QALVAGEEEQ VPDLDAQVDH IEDDVLRLIF
LTCHPSLSAE SRAALTLRLV AGLTTSEIAR GFLSTETAMG QRISRAKKTL SEARADFELP
TGTERDARLD DVMAVIYLVF NEGYSAAAGE DWMRPELASE GIRLARMLAE LMPLEPEVLG
LQALLEIQGS RLAARLDDDG APVLLEAQDR TRWDELLVRR GLAALRRAQA LAVRGRPIGK
YFLQASIAAQ HARAPRAEDT DWRQIARLYD VLATAAPGPV VEVNRAVAHG RAFDPAAGLA
VLAGLTGDEL GGSPLLPSVR GDLLERAGRH ADAAAAFSEA AALSRNEAER SVLRRRAEEN
LASVSKPG
//