ID A0A0Q9ZD04_9FLAO Unreviewed; 708 AA.
AC A0A0Q9ZD04;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 48.
DE SubName: Full=RNA-binding protein {ECO:0000313|EMBL:KRG30137.1};
GN ORFNames=APR42_13185 {ECO:0000313|EMBL:KRG30137.1};
OS Salegentibacter mishustinae.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Salegentibacter.
OX NCBI_TaxID=270918 {ECO:0000313|EMBL:KRG30137.1, ECO:0000313|Proteomes:UP000051643};
RN [1] {ECO:0000313|EMBL:KRG30137.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KCTC 12263 {ECO:0000313|EMBL:KRG30137.1};
RA Lin W., Zheng Q.;
RT "Draft genome sequence of Salegentibacter mishustinae KCTC 12263.";
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRG30137.1}.
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DR EMBL; LKTP01000002; KRG30137.1; -; Genomic_DNA.
DR RefSeq; WP_057480745.1; NZ_QKZW01000007.1.
DR AlphaFoldDB; A0A0Q9ZD04; -.
DR STRING; 270918.APR42_13185; -.
DR OrthoDB; 9804714at2; -.
DR Proteomes; UP000051643; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd05685; S1_Tex; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR InterPro; IPR041692; HHH_9.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR010994; RuvA_2-like.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR044146; S1_Tex.
DR InterPro; IPR023323; Tex-like_dom_sf.
DR InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR InterPro; IPR018974; Tex-like_N.
DR InterPro; IPR032639; Tex_YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF12836; HHH_3; 1.
DR Pfam; PF17674; HHH_9; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF09371; Tex_N; 1.
DR Pfam; PF16921; Tex_YqgF; 1.
DR SMART; SM00316; S1; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR PROSITE; PS50126; S1; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000051643}.
FT DOMAIN 638..707
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
SQ SEQUENCE 708 AA; 78898 MW; 17CA194382CD8A31 CRC64;
MKVQDYIQSR AQLPAKSIQN TIALLEADAT IPFISRYRKE ATGNLNEVAV EKISQLLTTF
NELEKRKAAV LKSIKEQDAL TDVLAGKIEK ATTLTEVEDL YLPYKKKRKT KADTARQVGL
EPLAKILMAQ NAQNIEQSAK QFLSEQVKTR AEAFTGAGHI IAEWINENTY VRNSLRRLYA
RKAQLSTKWV KTEDEHPEAA KFAQFEKWEE SLNRIPSHRF LAIHRAEKLG IIKVKMEVDK
NEALQLIEKS VIKNPDFSGI KYLKASIEDA FTRLLKKSFA TEFLSEAKEK ADEDAIAVFA
SNLEQLLMEA PLGSKRILAI DPGFKSGCKV VCLDEQGNLL YNEAIFPHPP QRKTDAASAK
IKSLVNAYKI QAIAIGNGTA ARETEEFIKK VYLPKEVSVF TVNEAGASVY SASKIAREEF
PNYDVTVRGA VSIGRRLSDP LAELVKIDPK SIGVGQYQHE VDQVKLKEKL DVVVMRCVNK
IGVNLNTASK ELLSYVSGIG PGLAQNILDY RKENERFGSR KELLKVPRLG AKAFEQSAGF
LRIRNADNPL DNSAVHPESY FVVEKMAKNN GLKPEALIGN KQILERINPE DYISGDLGLP
SLKDILEELK KPGADPRAKK KPFNFDPTVK TIGDLKPGMK LPGIVNNITN FGCFVDIGIK
ESGLIHISKL ANEFISDVNA VVKLNQELEV TVLSVDEEKK RVQLSLVD
//
