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Database: UniProt
Entry: A0A0R0BMJ9_9GAMM
LinkDB: A0A0R0BMJ9_9GAMM
Original site: A0A0R0BMJ9_9GAMM 
ID   A0A0R0BMJ9_9GAMM        Unreviewed;       139 AA.
AC   A0A0R0BMJ9;
DT   20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT   20-JAN-2016, sequence version 1.
DT   24-JAN-2024, entry version 32.
DE   RecName: Full=Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265};
DE            Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};
DE            EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};
DE   AltName: Full=Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265};
GN   Name=vapC {ECO:0000256|HAMAP-Rule:MF_00265};
GN   ORFNames=ABB25_06645 {ECO:0000313|EMBL:KRG58325.1};
OS   Stenotrophomonas koreensis.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales;
OC   Xanthomonadaceae; Stenotrophomonas.
OX   NCBI_TaxID=266128 {ECO:0000313|EMBL:KRG58325.1, ECO:0000313|Proteomes:UP000051254};
RN   [1] {ECO:0000313|EMBL:KRG58325.1, ECO:0000313|Proteomes:UP000051254}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=DSM 17805 {ECO:0000313|EMBL:KRG58325.1,
RC   ECO:0000313|Proteomes:UP000051254};
RA   Patil P.P., Midha S., Patil P.B.;
RT   "Genome sequencing and analysis of members of genus Stenotrophomonas.";
RL   Submitted (MAY-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Toxic component of a toxin-antitoxin (TA) system. An RNase.
CC       {ECO:0000256|HAMAP-Rule:MF_00265}.
CC   -!- COFACTOR:
CC       Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC         Evidence={ECO:0000256|ARBA:ARBA00001946,
CC         ECO:0000256|HAMAP-Rule:MF_00265};
CC   -!- SIMILARITY: Belongs to the PINc/VapC protein family.
CC       {ECO:0000256|ARBA:ARBA00038093, ECO:0000256|HAMAP-Rule:MF_00265}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KRG58325.1}.
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DR   EMBL; LDJH01000011; KRG58325.1; -; Genomic_DNA.
DR   RefSeq; WP_057665182.1; NZ_LDJH01000011.1.
DR   AlphaFoldDB; A0A0R0BMJ9; -.
DR   STRING; 266128.ABB25_06645; -.
DR   PATRIC; fig|266128.3.peg.199; -.
DR   OrthoDB; 9804823at2; -.
DR   Proteomes; UP000051254; Unassembled WGS sequence.
DR   GO; GO:0000287; F:magnesium ion binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0004540; F:RNA nuclease activity; IEA:InterPro.
DR   GO; GO:0090729; F:toxin activity; IEA:UniProtKB-KW.
DR   CDD; cd18731; PIN_NgFitB-like; 1.
DR   Gene3D; 3.40.50.1010; 5'-nuclease; 1.
DR   HAMAP; MF_00265; VapC_Nob1; 1.
DR   InterPro; IPR029060; PIN-like_dom_sf.
DR   InterPro; IPR002716; PIN_dom.
DR   InterPro; IPR022907; VapC_family.
DR   PANTHER; PTHR33653; RIBONUCLEASE VAPC2; 1.
DR   PANTHER; PTHR33653:SF1; RIBONUCLEASE VAPC2; 1.
DR   Pfam; PF01850; PIN; 1.
DR   SUPFAM; SSF88723; PIN domain-like; 1.
PE   3: Inferred from homology;
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_00265};
KW   Magnesium {ECO:0000256|ARBA:ARBA00022842, ECO:0000256|HAMAP-Rule:MF_00265};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|HAMAP-
KW   Rule:MF_00265};
KW   Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_00265};
KW   Reference proteome {ECO:0000313|Proteomes:UP000051254};
KW   Toxin {ECO:0000256|HAMAP-Rule:MF_00265};
KW   Toxin-antitoxin system {ECO:0000256|ARBA:ARBA00022649, ECO:0000256|HAMAP-
KW   Rule:MF_00265}.
FT   DOMAIN          2..124
FT                   /note="PIN"
FT                   /evidence="ECO:0000259|Pfam:PF01850"
FT   BINDING         5
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00265"
FT   BINDING         104
FT                   /ligand="Mg(2+)"
FT                   /ligand_id="ChEBI:CHEBI:18420"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00265"
SQ   SEQUENCE   139 AA;  14298 MW;  1E4618134CA83703 CRC64;
     MIVLDTNVVS EAMRPSPSPQ VLAWLDQQAA ETLHLTAVNL AELLVGLELL PQGKRKPGLD
     AALAGLLDEL FGGRVLAFDE QAAKHYAGII GNGHRAGTTI GVADGQIAAI AAAHGFAVAT
     RGRGGFEGAG IAVIDPWQA
//
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