ID A0A0R0FZX5_SOYBN Unreviewed; 1481 AA.
AC A0A0R0FZX5;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE RecName: Full=ATP-dependent DNA helicase {ECO:0000256|RuleBase:RU363044};
DE EC=3.6.4.12 {ECO:0000256|RuleBase:RU363044};
GN ORFNames=GLYMA_16G087000 {ECO:0000313|EMBL:KRH07412.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH07412.1};
RN [1] {ECO:0000313|EMBL:KRH07412.1, ECO:0000313|EnsemblPlants:KRH07412}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH07412};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH07412.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH07412}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH07412};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH07412.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH07412.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC Evidence={ECO:0000256|RuleBase:RU363044};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|RuleBase:RU363044};
CC -!- SIMILARITY: Belongs to the helicase family.
CC {ECO:0000256|RuleBase:RU363044}.
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DR EMBL; CM000849; KRH07412.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R0FZX5; -.
DR PaxDb; 3847-GLYMA16G10322-1; -.
DR EnsemblPlants; KRH07412; KRH07412; GLYMA_16G087000.
DR Gramene; KRH07412; KRH07412; GLYMA_16G087000.
DR InParanoid; A0A0R0FZX5; -.
DR Proteomes; UP000008827; Chromosome 16.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003678; F:DNA helicase activity; IEA:InterPro.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR GO; GO:0000723; P:telomere maintenance; IEA:InterPro.
DR CDD; cd18809; SF1_C_RecD; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR010285; DNA_helicase_pif1-like.
DR InterPro; IPR025476; Helitron_helicase-like.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR049163; Pif1-like_2B_dom.
DR PANTHER; PTHR45786; DNA BINDING PROTEIN-LIKE; 1.
DR PANTHER; PTHR45786:SF84; HELITRON_LIKE_N DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF14214; Helitron_like_N; 1.
DR Pfam; PF05970; PIF1; 1.
DR Pfam; PF21530; Pif1_2B_dom; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|RuleBase:RU363044};
KW DNA damage {ECO:0000256|RuleBase:RU363044};
KW DNA recombination {ECO:0000256|RuleBase:RU363044};
KW DNA repair {ECO:0000256|RuleBase:RU363044};
KW Helicase {ECO:0000256|RuleBase:RU363044};
KW Hydrolase {ECO:0000256|RuleBase:RU363044};
KW Nucleotide-binding {ECO:0000256|RuleBase:RU363044};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 420..570
FT /note="Helitron helicase-like"
FT /evidence="ECO:0000259|Pfam:PF14214"
FT DOMAIN 1318..1364
FT /note="DNA helicase Pif1-like 2B"
FT /evidence="ECO:0000259|Pfam:PF21530"
SQ SEQUENCE 1481 AA; 170360 MW; 3EE2F7213183B268 CRC64;
MENSVERRKR RKNILQERRQ SDDCQNNYVP NGKNVYQSTF HLCLCFINAN TNITIVIAEK
RKRMSPCDTQ FKGHIPIVHT QCTPLSNIML STYQCEHNHA RESAIRPRHS FNQRTIDAST
IQTNLMSKFG KENLTPSMLN HHANCPIHTI SDVDPIHTPS TTQHIHSGRY TIQKSRLIEH
ISDDSDEEIN KTEGVIDTGY KDVGDLVWQC RHYKAMMWYD ERINKDKQTK NPKFALCCGD
GKIQLLQNIR SYNVMFTFTS LGLQLDITYN TGRGPPTFCI HGQGHHLIGS LLPLANKSPK
FAQLYIYDTD NEVNNRLLQN PLNWFMIGSQ SDGRLCNLPN TTEVAAFIVG DEHTGNHRDI
IIEKQTGLLK IINELHPAYL PLQYPLLYPR GEDGYRPDIP HKDNPNIHAA KRKKVTMREY
FCYRLRSRNN EAQTILHSRR LFQQWIVDGY CMIESQKLNY VRQHQQQLRV DKYINLNVCN
NAPETLGNEK GKKRYMEQLY FDGIEICGHI GFPDLFLTLT CNPTWPEIQR KVRKSNLTPH
DCPDVVSRIF KMKLNQLMND LKRGHVFGPI LGCKGLPHAY ILIFLQPANK YSNPEDIDKI
ISVEIPNKYI DPELYEIVSK HMIHGPCGLP NRSAPCMADG KCIRFFPKKF NEATIVDQDG
FLVYRRTNDR RTVQKHGIEL DNRFVIPYNP QLLLKYRTHL NVEWCNQSTS IKYLFKYINK
ADNISRQHQV DDEIKQYLDC RYVSPPEACW KIFAFPMHGR APAVERLYFH LENQQPIYWT
NNQQIGTILS KSTIKESMFT AWMHSNKIYH DRRDLTYPEY VSKFVYVAHK RCRQPRKQGN
TIGRLIWVSP LTGELFYMRM MLSSAKGSQS FKDIRTVDNV VYHTFREACF AKGFLGSDQE
FVGALREANT WGTPHFLRKL FVNLLFMNTM ERPEYVWQQT WRWMADDIVF NHISQGIQLT
DKETMHICLT QIENMLQANR KSLRDFPSMP YPIGYAANPH QNKLIYNEMA YDKFWLANLT
DASIFYNIMR VVASQLGGVY FLYGYGGIGK TFMWKTLSSV VRSNGGIVLT VASSGIASLL
LPGGRTTHSK FAIPVPATQN STCNIHQGSD LVELLQRTKL IIWDEALMCH KFSFEALDKN
LKDIMHNDKP FGGKVIVFGV NHSDIVHASL NASYIWDHCQ ILKLTKNMCL QSNPSNHSST
YELKQFSDWL LDIGDGKLGQ PNDGHCKIII PDEFLIMDFE DPIQAIVDAT YPDLLQNYNN
ANFLQKRAIL ASTKDVVDKI NDYVLCLIPG DEKEYCSVDS VDKSDELLNP AFGVLTLEFL
NTLKTSGIPN HKLRIKIGTP IMLLRNLDQA DGLCNGTRLI VTKLGTNVVE AEVITGPNVG
HRTYIPRMNM SPSDSPWPFK LIRRQFSFIV SFAMTINKSQ GQSLAHVRLY LPNPVFCHGQ
LYVALSRVQS KKGLCILIHD KQGIAKNTTI NVVYKKVFAN L
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