ID A0A0R0GAE0_SOYBN Unreviewed; 483 AA.
AC A0A0R0GAE0;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 24-JAN-2024, entry version 36.
DE RecName: Full=LIM zinc-binding domain-containing protein {ECO:0000259|PROSITE:PS50023};
GN Name=100809736 {ECO:0000313|EnsemblPlants:KRH15264};
GN ORFNames=GLYMA_14G077800 {ECO:0000313|EMBL:KRH15265.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH15265.1};
RN [1] {ECO:0000313|EMBL:KRH15265.1, ECO:0000313|EnsemblPlants:KRH15264}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH15264};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH15265.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH15264}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH15264};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH15265.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH15265.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000847; KRH15264.1; -; Genomic_DNA.
DR EMBL; CM000847; KRH15265.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R0GAE0; -.
DR STRING; 3847.A0A0R0GAE0; -.
DR EnsemblPlants; KRH15264; KRH15264; GLYMA_14G077800.
DR EnsemblPlants; KRH15265; KRH15265; GLYMA_14G077800.
DR Gramene; KRH15264; KRH15264; GLYMA_14G077800.
DR Gramene; KRH15265; KRH15265; GLYMA_14G077800.
DR InParanoid; A0A0R0GAE0; -.
DR Proteomes; UP000008827; Chromosome 14.
DR ExpressionAtlas; A0A0R0GAE0; baseline and differential.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0043130; F:ubiquitin binding; IBA:GO_Central.
DR CDD; cd09396; LIM_DA1; 1.
DR Gene3D; 2.10.110.10; Cysteine Rich Protein; 1.
DR InterPro; IPR045218; DA1-like.
DR InterPro; IPR022087; DA1-like_dom.
DR InterPro; IPR003903; UIM_dom.
DR InterPro; IPR001781; Znf_LIM.
DR PANTHER; PTHR24209:SF29; PROTEIN DA1; 1.
DR PANTHER; PTHR24209; PROTEIN DA1-RELATED 2; 1.
DR Pfam; PF12315; DA1-like; 1.
DR Pfam; PF00412; LIM; 1.
DR Pfam; PF02809; UIM; 2.
DR SMART; SM00132; LIM; 1.
DR SMART; SM00726; UIM; 2.
DR SUPFAM; SSF57716; Glucocorticoid receptor-like (DNA-binding domain); 1.
DR PROSITE; PS00478; LIM_DOMAIN_1; 1.
DR PROSITE; PS50023; LIM_DOMAIN_2; 1.
DR PROSITE; PS50330; UIM; 2.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW LIM domain {ECO:0000256|PROSITE-ProRule:PRU00125};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00125};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00125}.
FT DOMAIN 124..184
FT /note="LIM zinc-binding"
FT /evidence="ECO:0000259|PROSITE:PS50023"
FT COILED 62..92
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 483 AA; 55406 MW; E60EC8BE54F0FD76 CRC64;
MGWLSRIFKG SDHNKLSEGH YYKEDAGYYL PSTSGVTNDA WNQSQNQNEN EDIDRAIALS
LVEETQKANN NVNDYRSQLE EDEQLARAIE QSLNLESPPR YGNENMYQPP IQYFPMGSSY
LHNRICAGCY TEIGYGRYLN CLNAFWHPEC FRCRACNLPI SDYEFSTSGN YPYHKSCYKE
SYHPKCDVCK HFIPTNPAGL IEYRAHPFWI QKYCPTHEHD GTTRCCSCER MESQEAGYIA
LKDGRKLCLE CLDSAIMDTN ECQPLHADIQ RFYESLNMKL DQQIPLLLVE RQALNEAREG
EKNGHYHMPE TRGLCLSEEL STFSRRPRLG TTMDMRAQPY RPTTRCDVTA ILILYGLPRL
LTGSILAHEM MHAWLRLKGY RTLSQDVEEG ICQVLSHMWL ESELSSASGS NFVSASSSSA
SHTSRKGKRP QFERKLGEFF KHQIESDISP VYGGGFRAGQ KAVSKYGLQR TLHHIRMTGT
FPY
//
