ID A0A0R0H2S0_SOYBN Unreviewed; 1310 AA.
AC A0A0R0H2S0;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100795889 {ECO:0000313|EnsemblPlants:KRH21987};
GN ORFNames=GLYMA_13G271100 {ECO:0000313|EMBL:KRH21987.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH21987.1};
RN [1] {ECO:0000313|EMBL:KRH21987.1, ECO:0000313|EnsemblPlants:KRH21987}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH21987};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH21987.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH21987}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH21987};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH21987.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH21987.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM000846; KRH21987.1; -; Genomic_DNA.
DR EMBL; CM000846; KRH21988.1; -; Genomic_DNA.
DR EnsemblPlants; KRH21987; KRH21987; GLYMA_13G271100.
DR EnsemblPlants; KRH21988; KRH21988; GLYMA_13G271100.
DR Gramene; KRH21987; KRH21987; GLYMA_13G271100.
DR Gramene; KRH21988; KRH21988; GLYMA_13G271100.
DR OMA; NWTGIND; -.
DR Proteomes; UP000008827; Chromosome 13.
DR ExpressionAtlas; A0A0R0H2S0; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0016747; F:acyltransferase activity, transferring groups other than amino-acyl groups; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd04301; NAT_SF; 1.
DR CDD; cd15532; PHD2_CHD_II; 1.
DR Gene3D; 3.40.630.30; -; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR016181; Acyl_CoA_acyltransferase.
DR InterPro; IPR000182; GNAT_dom.
DR InterPro; IPR032308; TDBD.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46309:SF7; OS04G0433900 PROTEIN; 1.
DR PANTHER; PTHR46309; PHD FINGER PROTEIN 12; 1.
DR Pfam; PF00628; PHD; 1.
DR Pfam; PF16135; TDBD; 1.
DR SMART; SM00249; PHD; 2.
DR SUPFAM; SSF55729; Acyl-CoA N-acyltransferases (Nat); 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS51186; GNAT; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 798..843
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 951..1098
FT /note="N-acetyltransferase"
FT /evidence="ECO:0000259|PROSITE:PS51186"
FT REGION 643..663
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1144..1176
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1227..1246
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1145..1176
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1310 AA; 145654 MW; 6DDBA89B7A3A9EB3 CRC64;
MLINKETEDL CDDNFEGSNE ERQIFSEVFS GNGIFQSNQK CLVPVAISFE HESAKNTFKS
FCSSNENSVV LHPSSSRLTH PEEEDFNVIR HSKEAALGCV PESFICEDQN DEDVNVKRMK
FSPHELACSR SDSEKNMSSS RLSKVVVSNL SCAVTSCDSE SIAFRLVESS KHGVISGCYL
LNHNKLNKQA AKDDVDVRNF NSTTADENIA KEARVSKAAA SPVSQESFAN RLVVTSPSTT
VVKKSGSPLN PEEMPVSSNV DISNASSMLE EEDPRTILQV HIVQLLKMAG WSIEKRQRPS
RRYPESVYRT PEGKTVREFT KAWRLCGELL SVEKCNFMCR DYKEWTDISQ FWFDLSSALI
KVEKTKMQSE DPAAILAYQW WLLDPFVVVI FFDRKIGALK KGEVVKATWS LVSSKYKVAC
APIGSSSGNL NQVPGGSNVN AVHQAKIRNS ESVDKQISEN YLETNKIIDG DVPMDMSEEN
NASGVSHDLV HSHDSRAMQP SECSEEEGGK ISVDSVFGRD NKYSASNVIL KKKMRRKCKR
VSEIKLSMFY HGDMLGSTVT DQVQSLDGEA SGLEEVQDYL VDNARKKRNC RKLSSVGAIQ
RNIRKTNCPT AGTDKSNRCL IKDDDLLVSA IFRNKDFSPE MIRGNSSAKS CKSRGQKKFK
SQKGRCRLLP RNPSNAGKHN KDGNRFYLGA RTILSWLIDN GVISLSDVIQ YRNPKDNVVI
KDGRITKDGI ICICCGKVLT LSEFKFHAGF TLNRPCLNIF MESGEPFTLC LLQAWSTEYK
ARKSQNQAVH ADENDKNDDS CGLCGEGGEL ICCDNCPSTF HLACLSTQEI PDGDWYCTNC
TCRICGNLVI DKDTLDAHDS LQCSQCEHKY HEKCLEDRDK QEGAILDTWF CGQSCQEVYS
GLQSQVGLVN QVADGISWTL LRCIHDDQKV HSAQWFALKA VCNTKLAVAL TIMEECFVSM
FDPRTGIHLI PQVLYNWGSE FARLNFQGFY TIVLEKDDVL ISVASIRVHG TTVAEMPLIA
TCSQYRRQGM CRLLVTAIEQ VLISFKVEKL VISAIPDLVE TWTKGFGFIP VDDIERQRLN
KINLMVFPGT VLLVKSLHWK EKIEGLCDQS TLATDESIKA GICSEGMAIS ESMAQDIGNI
TTNKGEAKSE HEPVDGKNQS DYEAGSETGR DDKTQAVDTA LEAKESTEIS SFSKEEKISY
LEVSGGSEKS IEEKNVKELR TSNNAEMANE SVQQSSENCA DKDGAEPGIS IVEDKNIKIG
EDQQNALQGH FSNLSCKTFL GSNFDTDSNI ECSVMYDETA FFGTFAKSAS
//
