ID A0A0R0HR48_SOYBN Unreviewed; 508 AA.
AC A0A0R0HR48;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE RecName: Full=BED-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=GLYMA_10G088500 {ECO:0000313|EMBL:KRH32945.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH32945.1};
RN [1] {ECO:0000313|EMBL:KRH32945.1, ECO:0000313|EnsemblPlants:KRH32945}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH32945};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH32945.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH32945}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH32945};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH32945.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH32945.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000843; KRH32945.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R0HR48; -.
DR EnsemblPlants; KRH32945; KRH32945; GLYMA_10G088500.
DR Gramene; KRH32945; KRH32945; GLYMA_10G088500.
DR InParanoid; A0A0R0HR48; -.
DR Proteomes; UP000008827; Chromosome 10.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR007021; DUF659.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR PANTHER; PTHR32166:SF120; BED-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR32166; OSJNBA0013A04.12 PROTEIN; 1.
DR Pfam; PF04937; DUF659; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 23..58
FT /note="BED-type"
FT /evidence="ECO:0000259|Pfam:PF02892"
FT DOMAIN 230..320
FT /note="DUF659"
FT /evidence="ECO:0000259|Pfam:PF04937"
FT REGION 422..460
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 480..508
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 424..449
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 508 AA; 57845 MW; DBC87FCFE6C30FF3 CRC64;
MAEPSSDVAT TSATRKNKTD PGWKYCHPLV EGETNTIVCN FCGKITKGGI TRAKQHLIGK
SGNIASCKKT PPNVVEELKE YMTTKKSGTT YSTSGSGNMT NIRDFEFGEP VGCDGSEDDE
FADSCNATAS AKTKCGTKKG PMDKFCKNPE NAINQRKMEM LRQMNIRDGL SFNLIKLKSF
ENMVAAIRQY EPHLPIPSYH DIRVPLLKKK VEYTKNLMKG HREQWVKYGF GIMFLKFVDG
FDFLKTNEKI FELLDAIVEE VGEENAVQVV TDNGSNYVLA GKLLEEKRKH IYWTPGATYC
IDLMLEDIGK LPLIRKTIRK EINLVGFIYA HSSTLSLLRN FINKRELVRH AITRFATSYL
TLERLHKEKA NIRKMFTSDE WTLNKLSKEP KGKEATKECR MYTRRKKQRL RGLECRMYTR
RKKQKTTSAA AAETSKKQAM VVGSSSRKQK AVQENDEDLD FEENIDLESE EEEIMINFET
FDGEEGEGDT PLPYDNNDDD YVGIGEDD
//
