ID A0A0R0IBX7_SOYBN Unreviewed; 501 AA.
AC A0A0R0IBX7;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 08-NOV-2023, entry version 42.
DE RecName: Full=MalT-like TPR region domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100792980 {ECO:0000313|EnsemblPlants:KRH36820};
GN ORFNames=GLYMA_09G025500 {ECO:0000313|EMBL:KRH36820.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH36820.1};
RN [1] {ECO:0000313|EMBL:KRH36820.1, ECO:0000313|EnsemblPlants:KRH36820}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH36820};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH36820.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH36820}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH36820};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH36820.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH36820.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the MS5 protein family.
CC {ECO:0000256|ARBA:ARBA00025750}.
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DR EMBL; CM000842; KRH36820.1; -; Genomic_DNA.
DR EMBL; CM000842; KRH36821.1; -; Genomic_DNA.
DR RefSeq; XP_006586849.1; XM_006586786.2.
DR AlphaFoldDB; A0A0R0IBX7; -.
DR EnsemblPlants; KRH36820; KRH36820; GLYMA_09G025500.
DR EnsemblPlants; KRH36821; KRH36821; GLYMA_09G025500.
DR GeneID; 100792980; -.
DR Gramene; KRH36820; KRH36820; GLYMA_09G025500.
DR Gramene; KRH36821; KRH36821; GLYMA_09G025500.
DR OrthoDB; 1084274at2759; -.
DR Proteomes; UP000008827; Chromosome 9.
DR ExpressionAtlas; A0A0R0IBX7; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR044961; MS5/SDI1.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR001440; TPR_1.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR36326:SF4; PROTEIN POLLENLESS 3-LIKE 1; 1.
DR PANTHER; PTHR36326; PROTEIN POLLENLESS 3-LIKE 2; 1.
DR Pfam; PF00515; TPR_1; 1.
DR SMART; SM00028; TPR; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS50005; TPR; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW TPR repeat {ECO:0000256|ARBA:ARBA00022803, ECO:0000256|PROSITE-
KW ProRule:PRU00339}.
FT REPEAT 91..124
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REGION 189..245
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 324..351
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 189..213
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 214..236
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 501 AA; 56699 MW; 7A29661BBA4EB84E CRC64;
MALVMKQLNR SDEAIEAIRS FRHLCPSDSQ DSLDNILVEL YKRSGRVDEE IAMLCHKLKQ
IEDGLTFVGR TTKQARSQGK KIQITAEQEI SRILGNLAWA YLQKGDYKTA EEHYRKALSF
EVDRNKQCNL AICLIHMNKI KEAKFLLQAV RTATKNRKMD DSFAKSFERA SQMLIEIETS
SSQNAAFSMT TQCPPQSFEN SIRMSSDSVQ SRSENRSEIS EGDAPHARRR LYQSPDPSRR
DLSVPCTKPK RCSWGFNNGH RREAWGDANS DYKPTFGTPP NDKHVTRMLN SRENGFSSPA
NGNGKAATLE DPAILKHEAT KVTSSDSLHT LNTESATEFT EKEKSAADDS SYGSILSESH
VTVVNGVNEF ASGKRKPEKK SWADIVEEEQ NEENDFFSGF TNFDDKNGAE VFNDENEDSN
IIYPSPWPQN QPDEWSSKKL ESLDKKDGHY ASESAILSRN PTARRSLCFN PELIGEKRLT
RRSRLQVFQD ITLLPETPRF A
//
