ID A0A0R0IHT9_SOYBN Unreviewed; 1021 AA.
AC A0A0R0IHT9;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 08-NOV-2023, entry version 36.
DE RecName: Full=JmjC domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=100810673 {ECO:0000313|EnsemblPlants:KRH41946};
GN ORFNames=GLYMA_08G060200 {ECO:0000313|EMBL:KRH41946.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH41946.1};
RN [1] {ECO:0000313|EMBL:KRH41946.1, ECO:0000313|EnsemblPlants:KRH41946}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH41946};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH41946.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH41946}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH41946};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH41946.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH41946.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|PROSITE-ProRule:PRU01002}.
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DR EMBL; CM000841; KRH41946.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R0IHT9; -.
DR EnsemblPlants; KRH41946; KRH41946; GLYMA_08G060200.
DR Gramene; KRH41946; KRH41946; GLYMA_08G060200.
DR Proteomes; UP000008827; Chromosome 8.
DR ExpressionAtlas; A0A0R0IHT9; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0032454; F:histone H3K9 demethylase activity; IEA:InterPro.
DR Gene3D; 2.60.120.650; Cupin; 2.
DR InterPro; IPR045109; JHDM2-like.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR001368; TNFR/NGFR_Cys_rich_reg.
DR InterPro; IPR014977; WRC_dom.
DR InterPro; IPR001841; Znf_RING.
DR PANTHER; PTHR12549; JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN; 1.
DR PANTHER; PTHR12549:SF42; PROTEIN B160; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF08879; WRC; 1.
DR SMART; SM00558; JmjC; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS00652; TNFR_NGFR_1; 1.
DR PROSITE; PS51667; WRC; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT DOMAIN 14..60
FT /note="WRC"
FT /evidence="ECO:0000259|PROSITE:PS51667"
FT DOMAIN 268..314
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 675..984
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 44..139
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 153..187
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 44..66
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 89..107
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 161..179
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1021 AA; 117336 MW; 7061D92D9F6AA058 CRC64;
MSKTPKEKET EEPLPDHLRC GRTDGRQWRC RRRVKENLKL CEIHYLQGRH RQYKEKVPES
LKLQRKRKSN NNNNNNNEEE EEEEEEEKPE PDKKNVLDDN VESRARRTSR IVKKKRMLSE
DSDASASSPP ARKKALKQGD MQLELLRMVL KREAEKNKNK SKSKNKKNNN KKKNKKKEKR
RKEEKEELCY TKEELRRELP NGVMEISPAS PTRDYNNVGS HCDVKVGVDS KTVTPRYFRS
KNVDRVPAGK LQIVPYGSNL KKGKRKKCHW CQRSESGNLI QCSSCQREFF CMDCVKERYF
DAENEIKKAC PVCRGTCPCK YCSASQCKDS ESKECLTGKS RVDRILHFHY LICMLLPVLK
QISEDQNIEL ETEVKIKGKN ISDIQIKQVE FGCSEKNYCN HCKTPILDLH RSCPSCSYSL
CSSCCQELSQ GKASGAMNSS VFKRPDKMKP CSASENHTLE ERATSIGNLT DTSVLPEWTN
GNGIDSLSCP PTELGGCGKS HLELRSVFPS SWIKEMEAKA EEIVCSYDFP ETSDKSSSCS
LCFDTDHVMD ISGDNFEHFQ KHWGKGHPIV VQDALRSTSN LSWDPLTMFC TYLEQSITRY
ENNKNLLESC LDWWEVEINI KQYFTGSVKR RPQRNTWDEM LKLKGWLSSQ IFKEQFPAHF
AEVIDALPVQ EYMHPLCGLL NLAANLPHGS AKHDIGPYVY ISYGSADKET DSVTKLCYDS
YDVVNIMTHT TDAPLSTEQL TKIRKLLKKH KTLCQMETIA TEEPREQKLN GMALLHGPET
ERKGSWSMVE EGMNFFRRVN RTSCISTEAK KVSSQSMDSN GECDFISDSD SGSTLLLLGT
VQTAELSKHN NPRNPFESSK RHKKKFTEHL GAQWDVFRRQ DVPKLIEYLK RHYAEFSYTH
DYDKKMVHPI LDQSIFLDST HKKRLKEEFK IEPWTFQQHV GQAVIIPAGC PYQMRNSKSS
VHAVLEFVSP ENVTEGIQLI DEVRLLPEDH KAKADLLEVK KMALHSMNTA IKEVRQLTSK
T
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