ID A0A0R0JKV3_SOYBN Unreviewed; 1498 AA.
AC A0A0R0JKV3;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE RecName: Full=Ionotropic glutamate receptor C-terminal domain-containing protein {ECO:0000259|SMART:SM00079};
GN ORFNames=GLYMA_06G234000 {ECO:0000313|EMBL:KRH55158.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH55158.1};
RN [1] {ECO:0000313|EMBL:KRH55158.1, ECO:0000313|EnsemblPlants:KRH55158}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH55158};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH55158.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH55158}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH55158};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH55158.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH55158.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-
CC pass membrane protein {ECO:0000256|ARBA:ARBA00004141}.
CC -!- SIMILARITY: Belongs to the glutamate-gated ion channel (TC 1.A.10.1)
CC family. {ECO:0000256|ARBA:ARBA00008685}.
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DR EMBL; CM000839; KRH55158.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R0JKV3; -.
DR SMR; A0A0R0JKV3; -.
DR PaxDb; 3847-GLYMA06G34920-2; -.
DR EnsemblPlants; KRH55158; KRH55158; GLYMA_06G234000.
DR Gramene; KRH55158; KRH55158; GLYMA_06G234000.
DR InParanoid; A0A0R0JKV3; -.
DR OMA; IWMIERN; -.
DR Proteomes; UP000008827; Chromosome 6.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0015276; F:ligand-gated monoatomic ion channel activity; IBA:GO_Central.
DR GO; GO:0038023; F:signaling receptor activity; IBA:GO_Central.
DR CDD; cd13686; GluR_Plant; 2.
DR CDD; cd19990; PBP1_GABAb_receptor_plant; 1.
DR Gene3D; 1.10.287.70; -; 2.
DR Gene3D; 3.40.50.2300; -; 3.
DR Gene3D; 3.40.190.10; Periplasmic binding protein-like II; 3.
DR InterPro; IPR001828; ANF_lig-bd_rcpt.
DR InterPro; IPR044440; GABAb_receptor_plant_PBP1.
DR InterPro; IPR015683; Ionotropic_Glu_rcpt.
DR InterPro; IPR001320; Iontro_rcpt_C.
DR InterPro; IPR028082; Peripla_BP_I.
DR InterPro; IPR001638; Solute-binding_3/MltF_N.
DR PANTHER; PTHR18966; IONOTROPIC GLUTAMATE RECEPTOR; 1.
DR PANTHER; PTHR18966:SF463; IONOTROPIC GLUTAMATE RECEPTOR C-TERMINAL DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF01094; ANF_receptor; 2.
DR Pfam; PF00060; Lig_chan; 2.
DR Pfam; PF00497; SBP_bac_3; 4.
DR SMART; SM00079; PBPe; 2.
DR SUPFAM; SSF53822; Periplasmic binding protein-like I; 2.
DR SUPFAM; SSF53850; Periplasmic binding protein-like II; 2.
PE 3: Inferred from homology;
KW Glycoprotein {ECO:0000256|ARBA:ARBA00023180};
KW Ion channel {ECO:0000256|ARBA:ARBA00023303};
KW Ion transport {ECO:0000256|ARBA:ARBA00023065};
KW Ligand-gated ion channel {ECO:0000256|ARBA:ARBA00023286};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Signal {ECO:0000256|ARBA:ARBA00022729};
KW Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW ECO:0000256|SAM:Phobius}; Transport {ECO:0000256|ARBA:ARBA00022448}.
FT TRANSMEM 398..417
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 459..483
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 648..670
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 1227..1246
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 1258..1276
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 1288..1313
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 1464..1486
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 271..629
FT /note="Ionotropic glutamate receptor C-terminal"
FT /evidence="ECO:0000259|SMART:SM00079"
FT DOMAIN 1107..1445
FT /note="Ionotropic glutamate receptor C-terminal"
FT /evidence="ECO:0000259|SMART:SM00079"
SQ SEQUENCE 1498 AA; 167884 MW; 6CD00979ED17CBCF CRC64;
MKAIAEIVKS WKLYNITMIC EDGDSSSIEV LSQLSGALKE VGTELSNVIA ILPLVSSSLS
QQLEKLREGQ CRVLIVHLSF PLALHLFETA KRMDMMGEGN VWITTGTFTS LVYSLNASTI
SNMQGIIGVK SYIQSLWYQN ANFYHRFRKN FSSENFEEFN YEPGIFAAQA YDVAWIVVDA
MRKTNQKGGQ LLLDKILLSN FTGLSGTIQF TDNKLTPAHT FQIINVIGRS YREIGFWSDG
LGFSKSLEQN AFYSSTVKEL GKVVNPTCAI RLRIGVPSTS TFKQYVNVIQ EDSGNDTSFK
FEGFAIDLFE ETVKKLQGIY HVEYDYLPFN GTTYDELVKK VYWKEYDAVV GDVAIVSTRY
EYVSFTQPYT DPGVVMIVPV KSKTGNRAWL FLKPFTKLMW VLILVIIVYN GFVVWLIERN
HCAELKGPIL HQTTTMLWLA FCSLFSVNGD RLHSNLSRVA TVVWLFVALI ITQTYTASLA
SMLTVEQFEP TVDSIQQLKN SNAMVGYDRG SYLKIYLQDV LGIKAENIKQ FDSQKSYADA
LRNKEIAAAF LDIPEAKIFL AKNCKGFVQA GPTFKIGGYG FNHVYAYSVA ISLQVFPKGS
PLLHSVNQAL LNISENGTLR NLENNMLASE ECEDITDPNV ETTSLSPASF MVLFILTGGT
STIVLLIYIF SVNHIYPGQR TMWSLMMAVI QSWRSQKRLF SRRVHNVAEN NESSDVKGII
GAILDSSSRI GQEHAVAINL ALEDFHQKNN LSFALHVRNS QGDPLLAATA ARDLIDNQKV
QAIIGPQTWA ETSLVAEVCT QKSIPFLSLA DATPEWAMKK WPFLLQSSPR QIMQMKAIAE
IVKSWKLYNV SMIYEDGDSS STEVLSRLSE ALTSVGTELS NVLTVPPLVS SSLSQQLEKL
REGQCRVLIV HLSFPLALHL FETAKRMDMM GEGNVWITTG TFTSLVHSLN ASTISNMQGV
IGVKSYIPKL WHQYGNFYHR FRKKFSSENF EEFNYEPGIF ATEAYDAATI VVDSMRKTNK
KGGQFLLDKI LRSNFTGLSG QIQFNGHERA PKHTFQIINV IGSSYREIGF WSDGLGFSKS
LDPNASYSSS VKELGKVVNP TCDIRLRIGV PSMSIFKQYA NVIQDHSENV TSFKGFAIDL
FYETVKKLPY HLEYDYFAFN GTYDELVKQV YLKNYDAVVG DVTIVSTRYE YASFTQPFTD
TGLVMVVPVK SKTGGRTWLF MKPFTKLMWI LILVIIFYNG FVVWMIERNH CPELKGPILH
QTTTMLWLAF CSLFSLNGDR LHSNLSRVAM VVWFFVALII TQIYTASLAS MLIVEQFEPT
VDSIQQLKNN NAIVGCDRGS YLQRYLQDAL GINAENIKQF DSQESHANAL RNKKIAAVFL
DVPGAKIFLA KYCKGFVQAG PIYKLGGYGF VFPRGSPLLP GVNQALLNIS ESGTLRDLEN
SMLASEKCKD IIDPGAETTS LSPASFMVLF ILTGGTSTTA LLIYIFSEKL VCKIRMST
//
