ID A0A0R0JTK3_SOYBN Unreviewed; 296 AA.
AC A0A0R0JTK3;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 47.
DE RecName: Full=MYB transcription factor {ECO:0000256|ARBA:ARBA00032813};
GN Name=100779583 {ECO:0000313|EnsemblPlants:KRH58124};
GN ORFNames=GLYMA_05G106000 {ECO:0000313|EMBL:KRH58124.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH58124.1};
RN [1] {ECO:0000313|EMBL:KRH58124.1, ECO:0000313|EnsemblPlants:KRH58124}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH58124};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH58124.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH58124}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH58124};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH58124.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH58124.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC {ECO:0000256|ARBA:ARBA00004604}.
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DR EMBL; CM000838; KRH58124.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R0JTK3; -.
DR SMR; A0A0R0JTK3; -.
DR STRING; 3847.A0A0R0JTK3; -.
DR PaxDb; 3847-GLYMA05G22500-3; -.
DR EnsemblPlants; KRH58124; KRH58124; GLYMA_05G106000.
DR Gramene; KRH58124; KRH58124; GLYMA_05G106000.
DR InParanoid; A0A0R0JTK3; -.
DR OMA; KMQPDMK; -.
DR Proteomes; UP000008827; Chromosome 5.
DR ExpressionAtlas; A0A0R0JTK3; baseline and differential.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0000786; C:nucleosome; IEA:InterPro.
DR GO; GO:0003691; F:double-stranded telomeric DNA binding; IEA:InterPro.
DR GO; GO:0008757; F:S-adenosylmethionine-dependent methyltransferase activity; IEA:UniProt.
DR GO; GO:0006334; P:nucleosome assembly; IEA:InterPro.
DR CDD; cd11660; SANT_TRF; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR005818; Histone_H1/H5_H15.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR001005; SANT/Myb.
DR InterPro; IPR044597; SMH1-6.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR46267; SINGLE MYB HISTONE 4; 1.
DR PANTHER; PTHR46267:SF11; TELOMERE REPEAT-BINDING FACTOR 2; 1.
DR Pfam; PF00538; Linker_histone; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SMART; SM00526; H15; 1.
DR SMART; SM00717; SANT; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS51504; H15; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
DR PROSITE; PS50090; MYB_LIKE; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 1..61
FT /note="HTH myb-type"
FT /evidence="ECO:0000259|PROSITE:PS51294"
FT DOMAIN 5..57
FT /note="Myb-like"
FT /evidence="ECO:0000259|PROSITE:PS50090"
FT DOMAIN 118..187
FT /note="H15"
FT /evidence="ECO:0000259|PROSITE:PS51504"
FT COILED 243..280
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 296 AA; 32357 MW; D967FD0E10A6957F CRC64;
MGAPKQKWTA EEEAALKAGV LKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA
IWGSRQKAKL ALKRNLPAPK IDNNHMALST IVRNDEVLDT KPIAVSGGPL QSPNLKEQIS
RLVDNHILEA IVNMKEQKGS DKVAIASFIE EKYRSPPNLS KLLSTKLKHM VASGKIVKEK
HKYRIAPSST VSEKRRCSSL VLLEEKPKDP SEVHKNDDVN ILSKSQIDAE ISKVKGLTAQ
EAAAAAAKAV AEAEAAIAQA EAAAREAEAA EAEAEAAQVF AKAAMKALKC KMLHIW
//
