ID A0A0R0JVA4_SOYBN Unreviewed; 1250 AA.
AC A0A0R0JVA4;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 27.
DE RecName: Full=ATP-dependent DNA helicase {ECO:0000256|RuleBase:RU363044};
DE EC=3.6.4.12 {ECO:0000256|RuleBase:RU363044};
DE Flags: Fragment;
GN ORFNames=GLYMA_06G196500 {ECO:0000313|EMBL:KRH54591.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH54591.1};
RN [1] {ECO:0000313|EMBL:KRH54591.1, ECO:0000313|EnsemblPlants:KRH54591}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH54591};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH54591.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH54591}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH54591};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH54591.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH54591.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC Evidence={ECO:0000256|RuleBase:RU363044};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|RuleBase:RU363044};
CC -!- SIMILARITY: Belongs to the helicase family.
CC {ECO:0000256|RuleBase:RU363044}.
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DR EMBL; CM000839; KRH54591.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R0JVA4; -.
DR EnsemblPlants; KRH54591; KRH54591; GLYMA_06G196500.
DR Gramene; KRH54591; KRH54591; GLYMA_06G196500.
DR InParanoid; A0A0R0JVA4; -.
DR Proteomes; UP000008827; Chromosome 6.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003678; F:DNA helicase activity; IEA:InterPro.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR GO; GO:0000723; P:telomere maintenance; IEA:InterPro.
DR CDD; cd18809; SF1_C_RecD; 1.
DR InterPro; IPR010285; DNA_helicase_pif1-like.
DR InterPro; IPR025476; Helitron_helicase-like.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR049163; Pif1-like_2B_dom.
DR PANTHER; PTHR45786; DNA BINDING PROTEIN-LIKE; 1.
DR PANTHER; PTHR45786:SF84; HELITRON_LIKE_N DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF14214; Helitron_like_N; 1.
DR Pfam; PF05970; PIF1; 2.
DR Pfam; PF21530; Pif1_2B_dom; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|RuleBase:RU363044};
KW DNA damage {ECO:0000256|RuleBase:RU363044};
KW DNA recombination {ECO:0000256|RuleBase:RU363044};
KW DNA repair {ECO:0000256|RuleBase:RU363044};
KW Helicase {ECO:0000256|RuleBase:RU363044};
KW Hydrolase {ECO:0000256|RuleBase:RU363044};
KW Nucleotide-binding {ECO:0000256|RuleBase:RU363044};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 287..446
FT /note="Helitron helicase-like"
FT /evidence="ECO:0000259|Pfam:PF14214"
FT DOMAIN 1087..1133
FT /note="DNA helicase Pif1-like 2B"
FT /evidence="ECO:0000259|Pfam:PF21530"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KRH54591.1"
SQ SEQUENCE 1250 AA; 144198 MW; B35D8BA4E65FBBD6 CRC64;
AGYKDIGNPI WQCKQCKAKM WYDERINKDK QTKNPKFSLC CGDGKIQLPI LHDAPQPLWQ
LLFDSRDSQV KKFQQNIRLY NLMFAFTSLG VKVDTSYNTG RGPPTLRIHG QSHHLIGSLL
PIPDNSPKFA QLYIYDTENE VNNRLSQYPI KNNVDEDIII GIKNMLDTHN PYAQKFRMAR
DKLDSSAVCD LKLKLISDRQ TDGRLYNLPN ASEVAALIVG DEHTTNNKDI IIEKQTGMLQ
RINELHPTYL PLQYPLLYPH GEDGYRPNIL HNIIRIAMLQ RGTKMQSRDN EAQTILHSRR
LFHQWVVDGY CMIESQKLNY VRQHQQELRV AKYINLNYCN NQPLTQGNEK GKRIILPSSF
VVSQRYMEQL YFDRMAICAH VGFPDLFLTL TCNPVWPEIQ RQVEKSNLTA HDCPDVMSRV
FKIKLNQLMH DLKSGHVFGP ILAYIDNIIF AEIPNKDTYP ELYQIVSNHM MHGPCGLANK
RAPYMANGKC FRFFPKKFQP ATIVDQDGFP VYRRRDTRRI VQKQGVHLDN QFVVPYSPHL
LLKYRTHLNL EWCNQSTSIK YLFKYINKGS DRITAAIVND QNQDGTHNQV HDEIKHYLDC
RYVSTPEACW KIFPFPMHGH ASAVERLYFH LENQQPVYWK DSQEIGTVLA KSTIKESMFT
AWMDSNKIYH HGRYLTYAEY VSKFVYDARK RCWKPRKQGN TIGRLIWVPP SSGELFYMRM
MLCSAKGSQC YEDIRTVENV VYHTFREACF AKGFLGKANT WGTPHYLKKL FVKLLFMNTM
DRPEYVWKQT WQWMTDDIVF NHRRQDFPSM PYPLGYAANT HQNNLIYNEL TYDRDILVAE
FDKCYQSLTD EQASIFNKIM HVVATQSGGV YFLYGYGGTC KTFLQVGLPG GRTTHSKFAI
SVPATKNSTC NIHQGTPMCH RYSIEALDKS LQDIMHNSNP FGGKVIVFGG DFRQILPVVP
RGNRSDIVYA TLNSSYIWNH CQILKLTKKM RFQSNPTDHS NLDELKQFFE WLLDIGDATY
PDLLHNYNNG DFLQKRVVLA STKDVVDKIN DYVLSLIPGE EKEYCSADSI DKSDELLNPA
FGVLTVEFLN SLKTSGIPNH KLIIKVGMPT ILLRNLDQAD GLCNRTRLIV TRLGSSVVEV
EIITGPNIGH RTYIPRMNLS PSDSPWPFKL IRRQFPFMVS FAMTINKSQG QSLAHVGLYL
PTPVFSHGQL YVALSRVQSK KGLHILIHDN QGTPKNTTIN VVYKEVFSNL
//
