ID A0A0R0K9P1_SOYBN Unreviewed; 1325 AA.
AC A0A0R0K9P1;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE RecName: Full=ATP-dependent DNA helicase {ECO:0000256|RuleBase:RU363044};
DE EC=3.6.4.12 {ECO:0000256|RuleBase:RU363044};
GN ORFNames=GLYMA_04G181800 {ECO:0000313|EMBL:KRH63514.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH63514.1};
RN [1] {ECO:0000313|EMBL:KRH63514.1, ECO:0000313|EnsemblPlants:KRH63514}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH63514};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH63514.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH63514}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH63514};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH63514.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH63514.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.12;
CC Evidence={ECO:0000256|RuleBase:RU363044};
CC -!- COFACTOR:
CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420;
CC Evidence={ECO:0000256|RuleBase:RU363044};
CC -!- SIMILARITY: Belongs to the helicase family.
CC {ECO:0000256|RuleBase:RU363044}.
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DR EMBL; CM000837; KRH63514.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R0K9P1; -.
DR STRING; 3847.A0A0R0K9P1; -.
DR PaxDb; 3847-GLYMA04G35307-1; -.
DR EnsemblPlants; KRH63514; KRH63514; GLYMA_04G181800.
DR Gramene; KRH63514; KRH63514; GLYMA_04G181800.
DR InParanoid; A0A0R0K9P1; -.
DR OMA; RICNSEV; -.
DR Proteomes; UP000008827; Chromosome 4.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003678; F:DNA helicase activity; IEA:InterPro.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR GO; GO:0000723; P:telomere maintenance; IEA:InterPro.
DR CDD; cd18809; SF1_C_RecD; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR010285; DNA_helicase_pif1-like.
DR InterPro; IPR025476; Helitron_helicase-like.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR049163; Pif1-like_2B_dom.
DR PANTHER; PTHR45786; DNA BINDING PROTEIN-LIKE; 1.
DR PANTHER; PTHR45786:SF66; REPLICATION FACTOR-A CARBOXY-TERMINAL DOMAIN PROTEIN; 1.
DR Pfam; PF14214; Helitron_like_N; 1.
DR Pfam; PF05970; PIF1; 1.
DR Pfam; PF21530; Pif1_2B_dom; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|RuleBase:RU363044};
KW DNA damage {ECO:0000256|RuleBase:RU363044};
KW DNA recombination {ECO:0000256|RuleBase:RU363044};
KW DNA repair {ECO:0000256|RuleBase:RU363044};
KW Helicase {ECO:0000256|RuleBase:RU363044};
KW Hydrolase {ECO:0000256|RuleBase:RU363044};
KW Nucleotide-binding {ECO:0000256|RuleBase:RU363044};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 280..460
FT /note="Helitron helicase-like"
FT /evidence="ECO:0000259|Pfam:PF14214"
FT DOMAIN 1168..1214
FT /note="DNA helicase Pif1-like 2B"
FT /evidence="ECO:0000259|Pfam:PF21530"
SQ SEQUENCE 1325 AA; 153512 MW; 156414FF82780446 CRC64;
MQCSHCNANM WYDERVSKDK RTTNPRFSLC CGNGKVELSL LHNPPKYLYQ LLYDHGTSDS
KNYQQNIRTY NMMFVFTSAG IKFDKSINHS RGPPTIRIQG QPCHRIGSML PMPGKEPKFA
QLYIFDTENE VQNRINAISP HNQIQEHIVS QLSEMLDEYN VHAKTFRMAK DRLQDVQVNN
IKLKLIANRE KDGRTYNVPT VPEVAALIVG DFDANSKRDI IIETQHGQLQ MIHELHSSYL
ALQYPLLFPY GEDGYRLDIL HSSRSDGKKR KRNCLTMREW FSYRLQCRSN ESITLLNSRR
LFQQFVVDDY TMVESERLSY IRNNQKKLRV DKFCSLQQSL DDGSRRCLNK GKRVILPSTF
VGSPRYMDQL YFDGMVICSH VGFPNLFITL TCNPNWPEIH RLLNPLNLKV ADRPDIISRV
FKLKYEQMLM DLTKNHMLGK VIAYMYTIEF QKRGLPHVHF HFYPKMFQPH TILDVDGFPV
YRRRNNGNAI EKNGVTVDNM YIVPYNPRLL RKYQAHINIE WCNQSTSIKY LFKYINKGYD
RVTVILIDED NDQTENGGTH NDEIKEYLDC RYICPCESTW RIFGFPIHGR KPAVERLHFH
LPGQHSVLYE DHDDIDDVLS KPSISDSKFI SWMNTNQNSV EGRNLTYAEF VSKFVYNQKK
ICWHLRKKGY TIGRLLWVPP ITGELFYLRM MLTVCKGPTS FEDLRTVDNV QYSTYKEACF
AMRFLQDDKE FGSTHYIRKI FVLLLLTATM SKPEQVWDQT WHWMADDIVY NHKKSSTSPA
LQLDDRTFQN LVLLQIEELL QANQRSLRDY HSMPYLENVN CPAYLDNSLI LAELNYNNEE
LRSEFEHLFS YMTDEQASIY NQIVEVVNKD EGGMFFLYGY GGTRKTYIWK TLASSLRADN
KIIIMVSSSG IASLLLPGGR TTHSKFKIPV PVFEDLTCNI HQGTQLAELL NQTSLIIWDE
APMAHKFFFE ALDHSLRDII KHNSKDNKIF GGKVMVFGGD FRQILPVIPR GSRSDIVNAT
INSSYLLDHC QILRLTKNMR LQNNMQAIDQ EETAAFAQWI IDIGDGIIGD ENDGYATIEI
PQELLITEYN DPIHSIISST FPDLSHHHND PEYFQTRAIL ASTNETVQQV NDYMLTMIPS
EQMEYLSFDS IDKSETIESC RFRSLTTEFL NSLTTSGLPN QCLKLKIGTP IMLLRNLDQT
QRLCNGTRLI ITRLAKHVIA ADIISGTNIG DHVYIPRMSM SPSQSPWPFK LLRRQFPIML
SYAMTINKSQ GQSLSSVGLY LPKPVFSHGQ LYVALSRVKS KKGLRILIHD QNKKKMTSTT
NVVFK
//
