ID A0A0R0KD83_SOYBN Unreviewed; 908 AA.
AC A0A0R0KD83;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE RecName: Full=BED-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=GLYMA_04G117600 {ECO:0000313|EMBL:KRH62584.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH62584.1};
RN [1] {ECO:0000313|EMBL:KRH62584.1, ECO:0000313|EnsemblPlants:KRH62584}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH62584};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH62584.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH62584}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH62584};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH62584.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH62584.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM000837; KRH62584.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R0KD83; -.
DR STRING; 3847.A0A0R0KD83; -.
DR EnsemblPlants; KRH62584; KRH62584; GLYMA_04G117600.
DR Gramene; KRH62584; KRH62584; GLYMA_04G117600.
DR InParanoid; A0A0R0KD83; -.
DR OMA; NDIDMDQ; -.
DR Proteomes; UP000008827; Chromosome 4.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR InterPro; IPR007021; DUF659.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR PANTHER; PTHR32166:SF120; BED-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR32166; OSJNBA0013A04.12 PROTEIN; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF04937; DUF659; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 21..39
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 323..471
FT /note="DUF659"
FT /evidence="ECO:0000259|Pfam:PF04937"
FT DOMAIN 689..759
FT /note="HAT C-terminal dimerisation"
FT /evidence="ECO:0000259|Pfam:PF05699"
FT REGION 56..135
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 845..865
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 878..908
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 59..85
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 102..133
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 908 AA; 103747 MW; 16B92133C390088F CRC64;
MAVFRGGFSK KRHRIAVALR VWDGGAMTAA IAMAVVAGWR KWRNFVVFVR GRSWADPTQP
YPSLPSRTHE RTVATSSDTT QQPTCLQPTQ PPPRHHPRQH ARMAATSSDD EPRQRTKKKT
REGRRRSHEE EEDAVEGDTN TIVCNFCGKI TKGGITRAKQ HLIGKSGNVA ACKKTPPNVV
EELKEYMATK KSGTTYSTSG SGNMANIRDF EFGEPIGCDG SEEDEFADSC NAATSAKTKC
GTKKGPMDKF CKNPENAINR RKMEMLRQMN IRESMDKNEV LKVHQHIARF WYQAGLSFNL
IKLKSFENMV AAIGQYGPHL PIPSYHDIRV PLLKKEVEYT ENLMKGHREQ WVKYGCTIMS
DAWTDRKQRC IINFLINSQA GTMFLKSVDG SDFVKTGEKL FELLDAIVEE VGEENVVQVV
TDNGSNYVLA GKLLEEKRKH IYWTPCAAHC IDLMLEDIGK LPLIRKTIRR AINLVGFIYA
HSSTLSLLRN FTNKRELVRH AITRFATSYL TLERLHKEKA NIRKMFTSDE WTLNKLSKEP
KGKEAAKVVL MPSFWNSVVY TLKVMAPLVK VLRLVDGERK PAMDYIYEAM DKAKETIIKS
FNNNENKYKD VFAIIDKRWN CQLHRPLHAA AHFLNPEFFM TTLTWSLILR SPMCIKKLIP
QFDVQQKILT ELHLYKIGAD HFGSDFAMAQ RKTHSPTYWW RMFGSQTPNL QKLAIKILSL
TCSASGCERN WSVFEQIHSK KRNRLEHKRL HDLVFVKYNQ QLKQRYNARD EIDPISLNDI
DMDQNDDNDA GNDLVFEDDD ALNWTTVYQA SGVGECRMYT RRKKQKTSVA AAQTSKKQAM
IVGSSSRKQK AVQENDEDLD VEENIDVEFE EEEIMVNFEA SDGEEGEGDA PLPYDNNEDD
YVGIGEDD
//
