ID A0A0R0KP83_SOYBN Unreviewed; 931 AA.
AC A0A0R0KP83;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 03-MAY-2023, entry version 35.
DE RecName: Full=5'-3' exoribonuclease {ECO:0000256|PIRNR:PIRNR037239};
DE EC=3.1.13.- {ECO:0000256|PIRNR:PIRNR037239};
GN Name=100789497 {ECO:0000313|EnsemblPlants:KRH68702};
GN ORFNames=GLYMA_03G245000 {ECO:0000313|EMBL:KRH68702.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH68702.1};
RN [1] {ECO:0000313|EMBL:KRH68702.1, ECO:0000313|EnsemblPlants:KRH68702}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH68702};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH68702.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH68702}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH68702};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH68702.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH68702.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Possesses 5'->3' exoribonuclease activity. Acts as an
CC endogenous post-transcriptional gene silencing (PTGS) suppressor.
CC {ECO:0000256|PIRNR:PIRNR037239}.
CC -!- SIMILARITY: Belongs to the 5'-3' exonuclease family. XRN2/RAT1
CC subfamily. {ECO:0000256|ARBA:ARBA00006994,
CC ECO:0000256|PIRNR:PIRNR037239}.
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DR EMBL; CM000836; KRH68702.1; -; Genomic_DNA.
DR RefSeq; XP_014629502.1; XM_014774016.1.
DR AlphaFoldDB; A0A0R0KP83; -.
DR EnsemblPlants; KRH68702; KRH68702; GLYMA_03G245000.
DR GeneID; 100789497; -.
DR Gramene; KRH68702; KRH68702; GLYMA_03G245000.
DR OrthoDB; 167745at2759; -.
DR Proteomes; UP000008827; Chromosome 3.
DR ExpressionAtlas; A0A0R0KP83; baseline and differential.
DR GO; GO:0005634; C:nucleus; IEA:InterPro.
DR GO; GO:0004534; F:5'-3' RNA exonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-UniRule.
DR CDD; cd18673; PIN_XRN1-2-like; 1.
DR Gene3D; 1.25.40.1050; -; 1.
DR Gene3D; 3.40.50.12390; -; 1.
DR InterPro; IPR027073; 5_3_exoribonuclease.
DR InterPro; IPR041412; Xrn1_helical.
DR InterPro; IPR004859; Xrn1_N.
DR InterPro; IPR017151; Xrn2/3/4.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR12341:SF74; 5'-3' EXORIBONUCLEASE 4; 1.
DR PANTHER; PTHR12341; 5'->3' EXORIBONUCLEASE; 1.
DR Pfam; PF17846; XRN_M; 2.
DR Pfam; PF03159; XRN_N; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR PIRSF; PIRSF037239; Exonuclease_Xrn2; 2.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839, ECO:0000256|PIRNR:PIRNR037239};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|PIRNR:PIRNR037239};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664,
KW ECO:0000256|PIRNR:PIRNR037239};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|PIRNR:PIRNR037239};
KW Reference proteome {ECO:0000313|Proteomes:UP000008827};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 265..280
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT COILED 113..147
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 931 AA; 106267 MW; FF9FDD048F338A04 CRC64;
MGVPAFYRWL ADRYPLSIAD VVEEEPSVGS GAVDVSKPNP NGMEFDNLYL DMNGIIHPCF
HPDGKSAPTT YEDVFKSIFD YIDHIFSLVR PRKLLYLAID GVAPRAKMNQ QRSRRFRAAK
DAAEKDAAEA EAEIERLREE FEGEMKLLSS KVKPETYDSN VITPGTPFMG VLSVALQYYI
QTRLNYNPGW RNTKVILSDS NVPGEGEHKI MDYIRLQRNL PGFNPNTRHC LYGLDADLIM
LSLATHEVHF SILREVITFP GQQEKCFQCG QVGHFAAECR GKPGEKAEDW NPVDDTPIHK
KKYQFLNIWV LREYLQYEME IPNPPFEIDF ERIVDDFVFL CFFVGNDFLP HMPTLEIREG
AVNLLMHIYR KEFTAMGGYL TEAGEATEIN EEMKARARGE MPGEPRASVL DKVKLGEPGY
KERYYAEKFG ALDLEKIEKI KKDTVLKYVE GLCWVCRYYY QGVCSWQWYY PYHYAPFASD
LKDLADLEIT FFLGEPFKPF DQLMGTLPAS SSSALPEKYR DLMIDPSSPI LQFYPADFEI
DMNGKRFAWQ GVAKLPFIDE KKLLSATSKL EATLTEEEQL RNSKMLDLLY VSSAHNLAPH
ILSYHQYSCQ LPLHERPALP IDPRASDGMN GYLWLYERNV LRTTVSSPIK GLQDIEFNQV
LNITYLNPRK HRHIPKPPDG VLMPKKILKA IDIKPFPVLW HEDNSGRRQG RERQQVHGAM
AGPQLGEAAH RLVKNSLNIK SNNMPYGSPE QFPGHHAMNR LRSAGPSGSG KYYGEDTSGY
YGQHYNHQGI ITRPRYPVSS NGGHNDKQNF RIQDRSYHHD QYYNGTTGFY TMAMEEGARA
RPYAVPLPRT PAVTLSRPPN SGSTTNGQHQ FVQNMGPPIP PPNWITRVPD TNGIYAGHQE
TALGGTYDKQ NMKVYQVKTR QPQDMPEYGN Q
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