ID A0A0R0KQM4_SOYBN Unreviewed; 279 AA.
AC A0A0R0KQM4;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE RecName: Full=Retrotransposon Copia-like N-terminal domain-containing protein {ECO:0000259|Pfam:PF14244};
GN ORFNames=GLYMA_03G126500 {ECO:0000313|EMBL:KRH66757.1};
OS Glycine max (Soybean) (Glycine hispida).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine;
OC Glycine subgen. Soja.
OX NCBI_TaxID=3847 {ECO:0000313|EMBL:KRH66757.1};
RN [1] {ECO:0000313|EMBL:KRH66757.1, ECO:0000313|EnsemblPlants:KRH66757}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Williams 82 {ECO:0000313|EnsemblPlants:KRH66757};
RC TISSUE=Callus {ECO:0000313|EMBL:KRH66757.1};
RX PubMed=20075913; DOI=10.1038/nature08670;
RA Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W.,
RA Hyten D.L., Song Q., Thelen J.J., Cheng J., Xu D., Hellsten U., May G.D.,
RA Yu Y., Sakurai T., Umezawa T., Bhattacharyya M.K., Sandhu D.,
RA Valliyodan B., Lindquist E., Peto M., Grant D., Shu S., Goodstein D.,
RA Barry K., Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N.,
RA Joshi T., Libault M., Sethuraman A., Zhang X.-C., Shinozaki K.,
RA Nguyen H.T., Wing R.A., Cregan P., Specht J., Grimwood J., Rokhsar D.,
RA Stacey G., Shoemaker R.C., Jackson S.A.;
RT "Genome sequence of the palaeopolyploid soybean.";
RL Nature 463:178-183(2010).
RN [2] {ECO:0000313|EnsemblPlants:KRH66757}
RP IDENTIFICATION.
RC STRAIN=Williams 82 {ECO:0000313|EnsemblPlants:KRH66757};
RG EnsemblPlants;
RL Submitted (FEB-2018) to UniProtKB.
RN [3] {ECO:0000313|EMBL:KRH66757.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Callus {ECO:0000313|EMBL:KRH66757.1};
RA Schmutz J., Cannon S., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.,
RA Song Q., Thelen J., Cheng J., Xu D., Hellsten U., May G., Yu Y.,
RA Sakurai T., Umezawa T., Bhattacharyya M., Sandhu D., Valliyodan B.,
RA Lindquist E., Peto M., Grant D., Shu S., Goodstein D., Barry K.,
RA Futrell-Griggs M., Abernathy B., Du J., Tian Z., Zhu L., Gill N., Joshi T.,
RA Libault M., Sethuraman A., Zhang X., Shinozaki K., Nguyen H., Wing R.,
RA Cregan P., Specht J., Grimwood J., Rokhsar D., Stacey G., Shoemaker R.,
RA Jackson S.;
RT "WGS assembly of Glycine max.";
RL Submitted (JUL-2018) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000836; KRH66757.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R0KQM4; -.
DR EnsemblPlants; KRH66757; KRH66757; GLYMA_03G126500.
DR Gramene; KRH66757; KRH66757; GLYMA_03G126500.
DR InParanoid; A0A0R0KQM4; -.
DR OMA; WHHNDNI; -.
DR Proteomes; UP000008827; Chromosome 3.
DR ExpressionAtlas; A0A0R0KQM4; baseline.
DR InterPro; IPR029472; Copia-like_N.
DR PANTHER; PTHR37610; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR37610:SF79; RETROTRANSPOSON COPIA-LIKE N-TERMINAL DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF14244; Retrotran_gag_3; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000008827}.
FT DOMAIN 13..60
FT /note="Retrotransposon Copia-like N-terminal"
FT /evidence="ECO:0000259|Pfam:PF14244"
FT REGION 250..279
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 264..279
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 279 AA; 31708 MW; 8D3802C795547D18 CRC64;
MAAIDDSNPF ILHSFNNLGI ALISHPLTGE NYNSWKKAMR MTLHGKNKYG FVNGSIPEPA
LGHSTHALWH HNDSIVSSWL LNSLSKEMQV NILHCSFVKA IWDDLQERFE QRNGSMFVSS
FYSKFRSLWE SLSELKPSHS CTCGGIKPWC DFEQMDYAMQ FLMRLNESFS TIRGQILSMD
PFPSVTKVFA LVVQEEKQKE TSFAAHNHPD NCFKGSFKNR LLCAHCGMLG HTQDRCFKLH
GYPPNYKRTG FSSEAKKHSS SSEPPHKVAQ QVSVDMSHS
//
