ID A0A0R2FLD1_9LACO Unreviewed; 260 AA.
AC A0A0R2FLD1;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE RecName: Full=RNA-binding S4 domain-containing protein {ECO:0000259|SMART:SM00363};
GN ORFNames=IV38_GL000252 {ECO:0000313|EMBL:KRN29368.1}, IV40_GL000417
GN {ECO:0000313|EMBL:KRN34103.1};
OS Lactobacillus selangorensis.
OC Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae;
OC Lactobacillus.
OX NCBI_TaxID=81857 {ECO:0000313|EMBL:KRN29368.1, ECO:0000313|Proteomes:UP000051751};
RN [1] {ECO:0000313|Proteomes:UP000051645, ECO:0000313|Proteomes:UP000051751}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-66 {ECO:0000313|EMBL:KRN29368.1,
RC ECO:0000313|Proteomes:UP000051751}, and DSM 13344
RC {ECO:0000313|EMBL:KRN34103.1, ECO:0000313|Proteomes:UP000051645};
RX PubMed=26415554; DOI=10.1038/ncomms9322;
RA Sun Z., Harris H.M., McCann A., Guo C., Argimon S., Zhang W., Yang X.,
RA Jeffery I.B., Cooney J.C., Kagawa T.F., Liu W., Song Y., Salvetti E.,
RA Wrobel A., Rasinkangas P., Parkhill J., Rea M.C., O'Sullivan O., Ritari J.,
RA Douillard F.P., Paul Ross R., Yang R., Briner A.E., Felis G.E.,
RA de Vos W.M., Barrangou R., Klaenhammer T.R., Caufield P.W., Cui Y.,
RA Zhang H., O'Toole P.W.;
RT "Expanding the biotechnology potential of lactobacilli through comparative
RT genomics of 213 strains and associated genera.";
RL Nat. Commun. 6:8322-8322(2015).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRN29368.1}.
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DR EMBL; JQAT01000001; KRN29368.1; -; Genomic_DNA.
DR EMBL; JQAZ01000001; KRN34103.1; -; Genomic_DNA.
DR RefSeq; WP_057768696.1; NZ_JQAZ01000001.1.
DR AlphaFoldDB; A0A0R2FLD1; -.
DR STRING; 81857.IV38_GL000252; -.
DR PATRIC; fig|81857.3.peg.258; -.
DR OrthoDB; 9812787at2; -.
DR Proteomes; UP000051645; Unassembled WGS sequence.
DR Proteomes; UP000051751; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR CDD; cd00165; S4; 1.
DR Gene3D; 3.30.1370.160; -; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 3.10.290.10; RNA-binding S4 domain; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR002942; S4_RNA-bd.
DR InterPro; IPR036986; S4_RNA-bd_sf.
DR InterPro; IPR048443; YlmH_N.
DR InterPro; IPR040591; YlmH_RBD.
DR PANTHER; PTHR13633:SF3; MITOCHONDRIAL TRANSCRIPTION RESCUE FACTOR 1; 1.
DR PANTHER; PTHR13633; UNCHARACTERIZED; 1.
DR Pfam; PF01479; S4; 1.
DR Pfam; PF21278; YlmH_1st; 1.
DR Pfam; PF17774; YlmH_RBD; 1.
DR SMART; SM00363; S4; 1.
DR SUPFAM; SSF55174; Alpha-L RNA-binding motif; 1.
DR PROSITE; PS50889; S4; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000051645};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182}.
FT DOMAIN 183..247
FT /note="RNA-binding S4"
FT /evidence="ECO:0000259|SMART:SM00363"
SQ SEQUENCE 260 AA; 30128 MW; 2FA1A7BEC41C2164 CRC64;
MDENVYQHFR KEERAFIDQV GNWLEQARGE YRPILTPFLD PRQAYILQEL VGTGGEIEVH
LWGGYPHAER RRGILAPDYF DPQEDDYGIR LFQIRYPQKF ATLQHSQVLG TLTNQGIDYD
RFGDIISDGQ NWQFFVEAEI SDFLAVDLQR IGKVTVHLEP VALQDHLLPT DDWAQETELV
ASLRLDNVVA TTYHISRSHT KQMIEAGLVR LNWAVCERPD ALVADWDVIS VRGYGRIRLE
AILGQTRKDK IRLSLRVIRK
//
