ID A0A0R2VMV1_9SPHI Unreviewed; 488 AA.
AC A0A0R2VMV1;
DT 20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT 20-JAN-2016, sequence version 1.
DT 13-SEP-2023, entry version 27.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:KRP13152.1};
GN ORFNames=ABR95_05960 {ECO:0000313|EMBL:KRP13152.1};
OS Sphingobacteriales bacterium BACL12 MAG-120813-bin55.
OC Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales.
OX NCBI_TaxID=1655600 {ECO:0000313|EMBL:KRP13152.1, ECO:0000313|Proteomes:UP000050993};
RN [1] {ECO:0000313|EMBL:KRP13152.1, ECO:0000313|Proteomes:UP000050993}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BACL12 MAG-120813-bin55 {ECO:0000313|EMBL:KRP13152.1};
RA Hugerth L.W., Larsson J., Alneberg J., Lindh M.V., Legrand C., Pinhassi J.,
RA Andersson A.F.;
RT "Metagenome-Assembled Genomes uncover a global brackish microbiome.";
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRP13152.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; LICN01000062; KRP13152.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0R2VMV1; -.
DR Proteomes; UP000050993; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 114..305
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 329..486
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 38..106
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 50..85
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 86..104
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 488 AA; 56490 MW; A1029D2E3EAC3489 CRC64;
MLNQRLSQKL LQKLSPQQIQ LMKLLQIPTD QLEQRIKEEL EANPALEEAA EFEAPEDDLF
SNEDNNSEED ELSDNGEELD LSEYLDDDYP DYKTQGDSYN PDDEGDNRTI PVAVSESFHE
NLLRQLGMVH LDENRRAIAK QIIGSIDDDG YLRREIPAII DDLAFSQNII AEEEEVMELL
DVVQGFDPPG VGARDLKECL LLQLERKMHT KTVNLAITVV EEYFDEFTKK HYEKLGKHLK
LEDDKLKVVI DEILKCNPKP GNTGKSDSSL FNRYIIPDFT IVNNNGELEL KLNSRNAPEL
HISHEFREMM QHYKAGDKKD KKQKEAMVFI KQKLDSAKWF IDAIRQRQHT LYNTMLHIMQ
HQYEFFLTGD EMNMKPMILK DIAELTGLDI STISRVANSK FVSTEFGTFP LKFFFSESLT
TDSGEEVSTR EVKKLLDEMI NAEDKKNPLS DQELTDMMKE KGYNIARRTV AKYREQLDIP
VARLRKEL
//
