GenomeNet

Database: UniProt
Entry: A0A0R4IS23_DANRE
LinkDB: A0A0R4IS23_DANRE
Original site: A0A0R4IS23_DANRE 
ID   A0A0R4IS23_DANRE        Unreviewed;       599 AA.
AC   A0A0R4IS23; A0A8M2BCN0;
DT   20-JAN-2016, integrated into UniProtKB/TrEMBL.
DT   20-JAN-2016, sequence version 1.
DT   24-JAN-2024, entry version 38.
DE   RecName: Full=AT-rich interactive domain-containing protein 3 {ECO:0000256|RuleBase:RU369100};
DE            Short=ARID domain-containing protein {ECO:0000256|RuleBase:RU369100};
GN   Name=arid3a {ECO:0000313|RefSeq:XP_005165415.1};
GN   Synonyms=si:ch211-113n10.6 {ECO:0000313|RefSeq:XP_005165415.1};
GN   OrderedLocusNames=arid3c {ECO:0000313|Ensembl:ENSDARP00000137706,
GN   ECO:0000313|RefSeq:XP_005165415.1,
GN   ECO:0000313|ZFIN:ZDB-GENE-060526-12};
OS   Danio rerio (Zebrafish) (Brachydanio rerio).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Danionidae; Danioninae; Danio.
OX   NCBI_TaxID=7955 {ECO:0000313|Ensembl:ENSDARP00000137706};
RN   [1] {ECO:0000313|Ensembl:ENSDARP00000137706, ECO:0000313|Proteomes:UP000000437}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000137706};
RX   PubMed=23594743; DOI=10.1038/nature12111;
RG   Genome Reference Consortium Zebrafish;
RA   Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M.,
RA   Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I.,
RA   Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.,
RA   White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y.,
RA   Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B.,
RA   Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S.,
RA   Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M.,
RA   Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J.,
RA   Clee C., Oliver K., Clark R., Riddle C., Elliot D., Eliott D.,
RA   Threadgold G., Harden G., Ware D., Begum S., Mortimore B., Mortimer B.,
RA   Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M.,
RA   Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M.,
RA   Glithero R., Howden P., Barker N., Lloyd C., Stevens C., Harley J.,
RA   Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D.,
RA   Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K.,
RA   Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R.,
RA   Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M.,
RA   Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D.,
RA   Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M.,
RA   Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M.,
RA   Woodmansey R., Clark G., Cooper J., Cooper J., Tromans A., Grafham D.,
RA   Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J.,
RA   Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I.,
RA   Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M.,
RA   Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M.,
RA   Rudolph-Geiger S., Teucke M., Lanz C., Raddatz G., Osoegawa K., Zhu B.,
RA   Rapp A., Widaa S., Langford C., Yang F., Schuster S.C., Carter N.P.,
RA   Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R.,
RA   Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I.,
RA   Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H.,
RA   Rogers J., Stemple D.L.;
RT   "The zebrafish reference genome sequence and its relationship to the human
RT   genome.";
RL   Nature 496:498-503(2013).
RN   [2] {ECO:0000313|Ensembl:ENSDARP00000137706}
RP   IDENTIFICATION.
RC   STRAIN=Tuebingen {ECO:0000313|Ensembl:ENSDARP00000137706};
RG   Ensembl;
RL   Submitted (NOV-2015) to UniProtKB.
RN   [3] {ECO:0000313|RefSeq:XP_005165415.1}
RP   IDENTIFICATION.
RC   STRAIN=Tuebingen {ECO:0000313|RefSeq:XP_005165415.1};
RG   RefSeq;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- FUNCTION: Transcription factor. {ECO:0000256|RuleBase:RU369100}.
CC   -!- SUBUNIT: Homodimer. {ECO:0000256|RuleBase:RU369100}.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU369100}.
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DR   EMBL; BX005419; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; CR558303; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   RefSeq; XP_005165415.1; XM_005165358.4.
DR   Ensembl; ENSDART00000165061; ENSDARP00000137706; ENSDARG00000114447.
DR   Ensembl; ENSDART00000165061.3; ENSDARP00000137706.1; ENSDARG00000114447.1.
DR   GeneID; 569444; -.
DR   CTD; 138715; -.
DR   ZFIN; ZDB-GENE-060526-12; arid3c.
DR   OMA; LHGHRNT; -.
DR   OrthoDB; 445024at2759; -.
DR   Proteomes; UP000000437; Chromosome 5.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IEA:InterPro.
DR   CDD; cd16867; ARID_ARID3; 1.
DR   Gene3D; 1.10.150.60; ARID DNA-binding domain; 1.
DR   InterPro; IPR045147; ARI3A/B/C.
DR   InterPro; IPR001606; ARID_dom.
DR   InterPro; IPR036431; ARID_dom_sf.
DR   InterPro; IPR023334; REKLES_domain.
DR   PANTHER; PTHR15348:SF2; AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 3C; 1.
DR   PANTHER; PTHR15348; AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT; 1.
DR   Pfam; PF01388; ARID; 1.
DR   SMART; SM01014; ARID; 1.
DR   SMART; SM00501; BRIGHT; 1.
DR   SUPFAM; SSF46774; ARID-like; 1.
DR   PROSITE; PS51011; ARID; 1.
DR   PROSITE; PS51486; REKLES; 1.
PE   1: Evidence at protein level;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|RuleBase:RU369100};
KW   Nucleus {ECO:0000256|RuleBase:RU369100};
KW   Proteomics identification {ECO:0007829|PeptideAtlas:A0A0R4IS23};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000437};
KW   Transcription {ECO:0000256|RuleBase:RU369100};
KW   Transcription regulation {ECO:0000256|RuleBase:RU369100}.
FT   DOMAIN          261..353
FT                   /note="ARID"
FT                   /evidence="ECO:0000259|PROSITE:PS51011"
FT   DOMAIN          458..552
FT                   /note="REKLES"
FT                   /evidence="ECO:0000259|PROSITE:PS51486"
FT   REGION          102..242
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          557..599
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          44..71
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        119..155
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        204..233
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        559..599
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   599 AA;  65128 MW;  B5EC3953C3C0DF49 CRC64;
     MVDNTSIATK SALQAAFSSA SSLPLLVSSP GAHGQSGGGG GMKLEAVMEN LQRQQAARLA
     LEEKLRQAEK EKDIRSMVES QIQQQALAFR HYQAAVRGAF AAGVPNSSSG HPLERRAESD
     IDDEDDEDDD PELDRGMDDE ERDMDEDDSM NEGGGDEDLE GPLAHYPPRH AVYPGAGQSP
     KSTPIHLSRV QPPYPAPRQA ESPSALAPQA QSQHHEWTYE EQFKQSGQGS GPGRKLKDSS
     VAFGGGGSSS LIQELYELDD DEKRKEFLDD LFSFMQKRGT PVNRIPIMAK QVLDLYTLYK
     LVTEKGGLVE VINKKIWREI TKGLNLPTSI TSAAFTLRTQ YMKYLYPYEC EKRGLSSPGE
     LQAAIDSNRR EGRRQSYGST LFNYSPVGTP TLLASPKLQM PHISMPTPNG GHMTQTPGIK
     KEDSMLSSCL TNRVGIPMSL AGHHSAAQAA AAAAVQAAAL EQLREKLESG EPPEKKVMLM
     AEEQQRIMQH ALQQNLFAMA TQLPMNIKLN NRDDRQETAL NLSTNGISSI NMSIEINGVV
     YTGVLFARKP AIGFMPSSQR VHHQHSSQGK SNSPGLSSHI QPSSSASSSA SSHGPATSP
//
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