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Database: UniProt
Entry: A0A0S3PYV0_9BRAD
LinkDB: A0A0S3PYV0_9BRAD
Original site: A0A0S3PYV0_9BRAD 
ID   A0A0S3PYV0_9BRAD        Unreviewed;       465 AA.
AC   A0A0S3PYV0;
DT   17-FEB-2016, integrated into UniProtKB/TrEMBL.
DT   17-FEB-2016, sequence version 1.
DT   24-JAN-2024, entry version 22.
DE   RecName: Full=L,D-transpeptidase catalytic domain-containing protein {ECO:0000259|Pfam:PF03734};
GN   ORFNames=GJW-30_1_03620 {ECO:0000313|EMBL:BAT61070.1};
OS   Variibacter gotjawalensis.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC   Nitrobacteraceae; Variibacter.
OX   NCBI_TaxID=1333996 {ECO:0000313|EMBL:BAT61070.1, ECO:0000313|Proteomes:UP000236884};
RN   [1] {ECO:0000313|EMBL:BAT61070.1, ECO:0000313|Proteomes:UP000236884}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=GJW-30 {ECO:0000313|EMBL:BAT61070.1,
RC   ECO:0000313|Proteomes:UP000236884};
RA   Lee J.S.;
RT   "Investigation of the bacterial diversity of lava forest soil.";
RL   Submitted (AUG-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC       {ECO:0000256|ARBA:ARBA00004752}.
CC   -!- SIMILARITY: Belongs to the YkuD family.
CC       {ECO:0000256|ARBA:ARBA00005992}.
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DR   EMBL; AP014946; BAT61070.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0S3PYV0; -.
DR   KEGG; vgo:GJW-30_1_03620; -.
DR   UniPathway; UPA00219; -.
DR   Proteomes; UP000236884; Chromosome.
DR   GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR   GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR   CDD; cd16913; YkuD_like; 1.
DR   Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR   InterPro; IPR005490; LD_TPept_cat_dom.
DR   InterPro; IPR038063; Transpep_catalytic_dom.
DR   InterPro; IPR016915; UCP029342.
DR   PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR   PANTHER; PTHR30582:SF2; L,D-TRANSPEPTIDASE YCIB-RELATED; 1.
DR   Pfam; PF03734; YkuD; 1.
DR   PIRSF; PIRSF029342; UCP029342_ErfK/YbiS/YcfS/YnhG; 1.
DR   SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000236884};
KW   Signal {ECO:0000256|SAM:SignalP};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   SIGNAL          1..28
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT   CHAIN           29..465
FT                   /note="L,D-transpeptidase catalytic domain-containing
FT                   protein"
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT                   /id="PRO_5006615796"
FT   DOMAIN          87..193
FT                   /note="L,D-transpeptidase catalytic"
FT                   /evidence="ECO:0000259|Pfam:PF03734"
FT   REGION          41..73
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          230..253
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          287..321
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   465 AA;  49759 MW;  E5D7DD7E9B0DDACE CRC64;
     MSRKIGIVLT GCTALFSAVL AGTPPAHAFL FWGRNEPSRA PAYPQYNEPA QPKKQTAKKP
     KVRALTPTEK KQDSGVVAQA KGKDLFVAVS IARQRLVLYA DGHEIAQSPI SSGTASHPTP
     TGIFSIIQKS RHHKSNLYSN APMPYMQRLT WSGVAMHQGV LPGYPASHGC VRLPEYFARQ
     MWAMSKMGMR VVVTREPVVP SDFSHPALFK QKAKVVAEAP ELVRVAQAAT RTNDARPVET
     RPAIDANPPV KAPEFELTPE GVPIIEAAPV VTDAAPVAPP AAKADAPAAA PATTAEPAPS
     AAPVAPPAVA AAPPPVDAQG RPLRAGPVSV FISRREGKLY VRKQFAPVFE TAITIEKPEQ
     AIGTHLFTAI SPNEDETFRW TAITMPGAPP ADTRPTKQNP NPLKTDPALG VSSAHEALDR
     VKIPQEVSAR ISEMMSHGAS VYVTDYGIGP ETGLETDFIV WTRGR
//
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