ID A0A0T2IFI6_9MICO Unreviewed; 320 AA.
AC A0A0T2IFI6;
DT 17-FEB-2016, integrated into UniProtKB/TrEMBL.
DT 17-FEB-2016, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE RecName: Full=DNA ligase (ATP) {ECO:0000256|ARBA:ARBA00012727};
DE EC=6.5.1.1 {ECO:0000256|ARBA:ARBA00012727};
GN ORFNames=ASD62_08895 {ECO:0000313|EMBL:KQZ89404.1};
OS Phycicoccus sp. Root563.
OC Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Intrasporangiaceae;
OC Phycicoccus.
OX NCBI_TaxID=1736562 {ECO:0000313|EMBL:KQZ89404.1, ECO:0000313|Proteomes:UP000051641};
RN [1] {ECO:0000313|Proteomes:UP000051641}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Root563 {ECO:0000313|Proteomes:UP000051641};
RA Garrido-Oter R., Bai Y.;
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:KQZ89404.1, ECO:0000313|Proteomes:UP000051641}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Root563 {ECO:0000313|EMBL:KQZ89404.1,
RC ECO:0000313|Proteomes:UP000051641};
RA Schulze-Lefert P.;
RT "Functional overlap of the Arabidopsis leaf and root microbiotas.";
RL Submitted (NOV-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-
CC (deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP +
CC diphosphate.; EC=6.5.1.1; Evidence={ECO:0000256|ARBA:ARBA00034003};
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KQZ89404.1}.
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DR EMBL; LMGM01000001; KQZ89404.1; -; Genomic_DNA.
DR RefSeq; WP_056915650.1; NZ_LMGM01000001.1.
DR AlphaFoldDB; A0A0T2IFI6; -.
DR STRING; 1736562.ASD62_08895; -.
DR OrthoDB; 9802472at2; -.
DR Proteomes; UP000051641; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003910; F:DNA ligase (ATP) activity; IEA:UniProtKB-EC.
DR GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR GO; GO:0006281; P:DNA repair; IEA:InterPro.
DR CDD; cd07906; Adenylation_DNA_ligase_LigD_LigC; 1.
DR CDD; cd07971; OBF_DNA_ligase_LigD; 1.
DR Gene3D; 3.30.1490.70; -; 1.
DR Gene3D; 3.30.470.30; DNA ligase/mRNA capping enzyme; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR InterPro; IPR012309; DNA_ligase_ATP-dep_C.
DR InterPro; IPR012310; DNA_ligase_ATP-dep_cent.
DR InterPro; IPR014146; LigD_ligase_dom.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR NCBIfam; TIGR02779; NHEJ_ligase_lig; 1.
DR PANTHER; PTHR45674:SF15; DNA LIGASE (ATP); 1.
DR PANTHER; PTHR45674; DNA LIGASE 1/3 FAMILY MEMBER; 1.
DR Pfam; PF04679; DNA_ligase_A_C; 1.
DR Pfam; PF01068; DNA_ligase_A_M; 1.
DR SUPFAM; SSF56091; DNA ligase/mRNA capping enzyme, catalytic domain; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR PROSITE; PS50160; DNA_LIGASE_A3; 1.
PE 4: Predicted;
KW Ligase {ECO:0000256|ARBA:ARBA00022598, ECO:0000313|EMBL:KQZ89404.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000051641}.
FT DOMAIN 105..245
FT /note="ATP-dependent DNA ligase family profile"
FT /evidence="ECO:0000259|PROSITE:PS50160"
SQ SEQUENCE 320 AA; 35010 MW; 747CC30EF1B9A9BD CRC64;
MRPMLASPAT AIPHGDGWVH EVKWDGMRVL ADIRDGHLTL TSRTGNDVTA SYPELAPLAE
AYDDMLLDGE VVALDGGRPS FGALAERMHV RDRRKAERLA AVRPVTLMVF DLLRLYGSDL
TSQPLSARRD LLERLDLAGR HWQVPPVYDD GEELFSATLE QGLEGVVSKR LSAPYLPGRR
STDWLKSPHK LTVSAVVGGW RPEVGTTDRL GAVLLGVPSP QGWRYAGRMG SGIAGRAQRQ
LAEVLAPLAR ETSPFVTQVP RIDADGAFWV EPRVVVEART LEVTRDGRLR QPAYLGVRTD
LTPEDLLSEV AGADEEAGDV
//
