ID A0A0U3DT98_9EURY Unreviewed; 496 AA.
AC A0A0U3DT98;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 24-JAN-2024, entry version 29.
DE RecName: Full=DNA-directed RNA polymerase subunit Rpo1C {ECO:0000256|HAMAP-Rule:MF_00411};
DE EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00411};
DE AltName: Full=DNA-directed RNA polymerase subunit A'' {ECO:0000256|HAMAP-Rule:MF_00411};
GN Name=rpoA2 {ECO:0000256|HAMAP-Rule:MF_00411,
GN ECO:0000313|EMBL:ALT69625.1};
GN Synonyms=rpo1C {ECO:0000256|HAMAP-Rule:MF_00411};
GN ORFNames=sm9_1859 {ECO:0000313|EMBL:ALT69625.1};
OS Methanobrevibacter millerae.
OC Archaea; Euryarchaeota; Methanomada group; Methanobacteria;
OC Methanobacteriales; Methanobacteriaceae; Methanobrevibacter.
OX NCBI_TaxID=230361 {ECO:0000313|EMBL:ALT69625.1, ECO:0000313|Proteomes:UP000067738};
RN [1] {ECO:0000313|EMBL:ALT69625.1, ECO:0000313|Proteomes:UP000067738}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=SM9 {ECO:0000313|EMBL:ALT69625.1,
RC ECO:0000313|Proteomes:UP000067738};
RA Leahy S.C., Kelly W.J., Pacheco D.M., Li D., Altermann E., Attwood G.T.;
RT "The complete genome sequence of the rumen methanogen Methanobrevibacter
RT millerae SM9.";
RL Submitted (APR-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase (RNAP) catalyzes the
CC transcription of DNA into RNA using the four ribonucleoside
CC triphosphates as substrates. Forms part of the jaw domain.
CC {ECO:0000256|HAMAP-Rule:MF_00411}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC ECO:0000256|HAMAP-Rule:MF_00411};
CC -!- SUBUNIT: Part of the RNA polymerase complex. {ECO:0000256|HAMAP-
CC Rule:MF_00411}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_00411}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC {ECO:0000256|HAMAP-Rule:MF_00411}.
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DR EMBL; CP011266; ALT69625.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0U3DT98; -.
DR KEGG; mmil:sm9_1859; -.
DR PATRIC; fig|230361.4.peg.1922; -.
DR Proteomes; UP000067738; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-UniRule.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:UniProtKB-UniRule.
DR CDD; cd06528; RNAP_A; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR HAMAP; MF_00411; RNApol_arch_Rpo1C; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR012757; RPO1C.
DR NCBIfam; TIGR02389; RNA_pol_rpoA2; 1.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_00411};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|HAMAP-
KW Rule:MF_00411};
KW DNA-directed RNA polymerase {ECO:0000256|HAMAP-Rule:MF_00411,
KW ECO:0000313|EMBL:ALT69625.1};
KW Nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00411};
KW Transcription {ECO:0000256|HAMAP-Rule:MF_00411};
KW Transferase {ECO:0000256|HAMAP-Rule:MF_00411}.
FT DOMAIN 71..442
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF04998"
SQ SEQUENCE 496 AA; 56069 MW; EE86A63F6CBA75F1 CRC64;
MDELIEKVQN TLEERNICIP ENYDIKNILV DYDSIDVTDE VFEEIIAKLK NINLICNLLN
QFNMDFVEFS QTLEENDIEL LDYYYIKNIF SKFNTNQLSE EDLDSVIGQI SVIDKVLNVL
FDKGIEFPKG YVEDLANAYT RRDLTDDELD KLVDKLKTAY DRAHVEAGEA VGTVAAQSVG
EPGTQMTMRT FHYAGVTELN VTLGLPRLIE IVDARKDIAT PTMDIYFEED KRYDEEFVKT
LANKIGKSTI NDILDDFNLN YAEMQVEATL SDKKIDERRL VKEDIIQKIE ADFKKEKPEI
NGNLIIIKPK QDGDDRHRIR NLRLLADKVR DLQISGVKKI GKVIIRKDEE WVIHTEGSNL
KEILSFDGID ARRTTTNSIR EIEDVLGIEA ARQSIINEAN NTLSEQGLTV DVRHIMLVAD
IMTSEGEVKS IGRHGISGEK SSVLARAAFE ETGKHLLNAS IRGEVDDLTG IIENIIIGQP
IPLGTGSIGV KMAKNE
//