ID A0A0V0RQU5_9BILA Unreviewed; 1233 AA.
AC A0A0V0RQU5;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 27-MAR-2024, entry version 23.
DE SubName: Full=Protein SWAP {ECO:0000313|EMBL:KRX16854.1};
GN Name=swp-1 {ECO:0000313|EMBL:KRX16854.1};
GN ORFNames=T07_4972 {ECO:0000313|EMBL:KRX16854.1};
OS Trichinella nelsoni.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC Trichinellida; Trichinellidae; Trichinella.
OX NCBI_TaxID=6336 {ECO:0000313|EMBL:KRX16854.1, ECO:0000313|Proteomes:UP000054630};
RN [1] {ECO:0000313|EMBL:KRX16854.1, ECO:0000313|Proteomes:UP000054630}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ISS37 {ECO:0000313|EMBL:KRX16854.1};
RA Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT "Evolution of Trichinella species and genotypes.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRX16854.1}.
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DR EMBL; JYDL01000098; KRX16854.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0V0RQU5; -.
DR Proteomes; UP000054630; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006397; P:mRNA processing; IEA:InterPro.
DR Gene3D; 1.10.10.790; Surp module; 2.
DR InterPro; IPR002483; PWI_dom.
DR InterPro; IPR045137; RBM26/27.
DR InterPro; IPR000061; Surp.
DR InterPro; IPR035967; SWAP/Surp_sf.
DR InterPro; IPR019147; SWAP_N_domain.
DR PANTHER; PTHR14398; RNA RECOGNITION RRM/RNP DOMAIN; 1.
DR PANTHER; PTHR14398:SF0; ZINC FINGER PROTEIN SWM; 1.
DR Pfam; PF09750; DRY_EERY; 1.
DR Pfam; PF01480; PWI; 1.
DR Pfam; PF01805; Surp; 2.
DR SMART; SM01141; DRY_EERY; 1.
DR SMART; SM00648; SWAP; 2.
DR SUPFAM; SSF109905; Surp module (SWAP domain); 2.
DR PROSITE; PS50128; SURP; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000054630};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 168..210
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
FT DOMAIN 327..367
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
FT REGION 123..147
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 227..272
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 696..798
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 865..894
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1199..1233
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 124..146
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 227..245
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 700..735
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 759..781
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 782..798
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 865..886
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1206..1233
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1233 AA; 137582 MW; CEE3159632BA8382 CRC64;
MHRNSLLQEE SSGEFLAFGY PCKLFDSRGG RDCADESADL IPLHCNRKIL VDRFDCRLQL
SNLEKYDASK VEQSLLIADR SLEALLDAER YRDFKLTCET PKVENEIRMG TEIYFNYDDL
ESKPQHGCQP KEEAEGTEDE QKEQFVPPAE LKVPVGVTMP KTVKEGIIIE KTAAFIAEQG
SQMEIIVNAK QKSNPQFRFL DWNHPLNKYY KHVLKMIKEK RYTPVVVKKD PAPESESDSD
DSSEHYLHPS LMGGAGKTAV AKDNEPLSLP KTSYRLGEEN DVYSELFNGL VAVCPQLAAA
VSTAKGKETG GSAEGLLLPP PPDLYPVVDR VAAYVARNGP QFEQILRERN DPRFSFIDPS
NKYNPYYMAL LQNYESENYI ARLQQNVQNQ FVEGVPMSLN YLSYYGFVPQ PPPPPRSTPP
PPAVENQEET LNLKKTKTVY CSDHLTSAAA SSSVSEKPTE VGSVGPVCFT IKAKNQEETC
SMVDKANLDA HQDETINLSL QLDSDVLMSD CAEKFDCKFV DGSGDATEST VKSVDEYMQR
EITAFPEVGK KEQKNVEEDL NLKRARRYRA KKFVDEFAKK IRKREKSCVD EEKVKKHGHI
SEGELCDSES SESTLIGPSS NACYGIIELL CSRCDADPAA LAKYVMALLK KDKTEADLKH
FCLDQLDVFL QKETKKFVDE LFLALKSKVY IVTDKESQST STKEVPKKRS LEPSRNEKPS
ADEHLKSRRV DSYSGSRPVR RYGSSPKARS KSSERSKGKG DATSISQNKA SSSTVRDRVR
AHWSPSNNKE QRKSTHKEKG YCMLGDNCVY DHGPDPVVVE DVALSSMIPS RSNKSLPTPP
PNFSVPPPGY VPIPPPPPGV DSNFQTEGYN PEAPSLTSAS TGTAVPLPPP YTQPPPPIWA
QPPPVLRPFG PRQIASYAQL RVCYEGDPQA ALITYMTRPQ ALAAYKSTDP ILNNRFIRVF
WHNQKDGTAV DDTGTSDQSS RPARIPIRDR LELPVKSSSN GTSSHEEAIF KAETNATAAN
TGSDTISTTM NKMDGDGFAT KSVRLVHNAD AEVKNPVANV AASKGENTKV WIVVWNNNKH
CRNSAYRPER NRRIPRSAVL DLRSRSILIT DFCMEHKDAL IEHLQQFGTL RDIDFYPLTD
PAVGKVIASF YDRKEAERAF TDGKLFKDQL LNMTWAVEDK DAMAAALSAG SKSDLSAKAL
LKTLDPPDDD DDDDDLFEEN EKEEMEEEEQ QLA
//
