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Database: UniProt
Entry: A0A0V0RRI4_9BILA
LinkDB: A0A0V0RRI4_9BILA
Original site: A0A0V0RRI4_9BILA 
ID   A0A0V0RRI4_9BILA        Unreviewed;      2256 AA.
AC   A0A0V0RRI4;
DT   16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT   16-MAR-2016, sequence version 1.
DT   08-MAY-2019, entry version 16.
DE   SubName: Full=Mediator of RNA polymerase II transcription subunit 23 {ECO:0000313|EMBL:KRX17036.1};
DE   Flags: Fragment;
GN   Name=Sars {ECO:0000313|EMBL:KRX17036.1};
GN   ORFNames=T07_10315 {ECO:0000313|EMBL:KRX17036.1};
OS   Trichinella nelsoni.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC   Trichinellida; Trichinellidae; Trichinella.
OX   NCBI_TaxID=6336 {ECO:0000313|EMBL:KRX17036.1, ECO:0000313|Proteomes:UP000054630};
RN   [1] {ECO:0000313|EMBL:KRX17036.1, ECO:0000313|Proteomes:UP000054630}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ISS37 {ECO:0000313|EMBL:KRX17036.1};
RA   Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT   "Evolution of Trichinella species and genotypes.";
RL   Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an
CC       EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
CC       preliminary data. {ECO:0000313|EMBL:KRX17036.1}.
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DR   EMBL; JYDL01000095; KRX17036.1; -; Genomic_DNA.
DR   Proteomes; UP000054630; Unassembled WGS sequence.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0004828; F:serine-tRNA ligase activity; IEA:InterPro.
DR   GO; GO:0006434; P:seryl-tRNA aminoacylation; IEA:InterPro.
DR   CDD; cd00770; SerRS_core; 1.
DR   Gene3D; 1.10.287.40; -; 1.
DR   InterPro; IPR002314; aa-tRNA-synt_IIb.
DR   InterPro; IPR006195; aa-tRNA-synth_II.
DR   InterPro; IPR021629; Mediator_Med23.
DR   InterPro; IPR036938; P_Acid_Pase_2/haloperoxi_sf.
DR   InterPro; IPR000326; P_Acid_Pase_2/haloperoxidase.
DR   InterPro; IPR002317; Ser-tRNA-ligase_type_1.
DR   InterPro; IPR015866; Ser-tRNA-synth_1_N.
DR   InterPro; IPR042103; SerRS_1_N_sf.
DR   InterPro; IPR033729; SerRS_core.
DR   InterPro; IPR010978; tRNA-bd_arm.
DR   PANTHER; PTHR12691; PTHR12691; 2.
DR   Pfam; PF11573; Med23; 2.
DR   Pfam; PF01569; PAP2; 1.
DR   Pfam; PF02403; Seryl_tRNA_N; 1.
DR   Pfam; PF00587; tRNA-synt_2b; 1.
DR   PRINTS; PR00981; TRNASYNTHSER.
DR   SMART; SM00014; acidPPc; 1.
DR   SUPFAM; SSF46589; SSF46589; 1.
DR   SUPFAM; SSF48317; SSF48317; 1.
DR   TIGRFAMs; TIGR00414; serS; 1.
DR   PROSITE; PS50862; AA_TRNA_LIGASE_II; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000054630};
KW   Membrane {ECO:0000256|SAM:Phobius};
KW   Reference proteome {ECO:0000313|Proteomes:UP000054630};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM   1458   1480       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM   1550   1572       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM   1584   1603       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM   1610   1628       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM   1662   1680       Helical. {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM   1701   1717       Helical. {ECO:0000256|SAM:Phobius}.
FT   DOMAIN     1955   2195       AA_TRNA_LIGASE_II. {ECO:0000259|PROSITE:
FT                                PS50862}.
FT   COILED      758    790       {ECO:0000256|SAM:Coils}.
FT   NON_TER    2256   2256       {ECO:0000313|EMBL:KRX17036.1}.
SQ   SEQUENCE   2256 AA;  259738 MW;  8F73877468F5EB83 CRC64;
     MSVSLSDFEA KVKNLFKEHA KTGIAHFFFR PYLITSSEEC EKKILISTAN ELMEIFTSLP
     QNLQESAFSI VISHRVLSNS ANRIVDFFVR NVTQRQMLSI KCICEKLLTC AELNINSCGW
     NDTFAFFMEN ISLLDYKGVR DTLKRLLDIP IPVHLQVDQR KSVEAVEKLI KTICDRKNNL
     LPAYFVITEI IKNLPEQRCF SHWRMADCFT EIIESFRPLA QLNSVCGRTF MTPIPGHVGF
     YFNAFWKLEV LSLRFPLKGL LPYSQDLLNP QMRLLTHVFM HYTYRDAIAV LLGTAKPEKS
     RIPYFEEVIT EIILELMFTA ECDHSQLNPQ AWRIISTQII YLTLQQSICF TRLVKILHTK
     LTHYPYRYAR NQLMWCLFNF LSGGMQKYSV EEFAVILDLY RLLYTGRDIF TVSGSDSSCV
     LMLAPTCIWI HILKKSPSME VELPPTVNTQ RKFLQEALKN KTQFNTDNYM VAVLCNAYSS
     TSEIFQQDLL PILLENLDNT RGHNSTQASG NFTSNATNSM PYPNGAVSEV KLRPLKLEFL
     DSVSVHVRMN IANSLIGTFG RFMQGKSAWP SPALVETYCR MLTYPDLEIL GLKQFTSHIV
     LTAARHQCCE MMYICCEILN YRLFNIPSTY RVHAIVTLQQ TLAFAKFQTN ASLYWMLERT
     LLLQFQWYPH YEIFQAPFAR LLNSFVAVAA DGTKQSIAEN EELMRIIILT LARSTVISSN
     SDSCFIEGVY RELLNKLPSY SWPQSTLSVF PQVFCSHYTQ QQQQQQQQQQ QQQQQQQQQQ
     QQQQQQQQQQ PQPHQSNVVV GSSQQPQQQQ QSRFLLQQQV DEEYIKHRTF GSELSLIDYF
     TNTSTSTVYL CLLWRLVYDT GELPAVSMKI LEVLGPRKVL VHLKSLADFL VYETNSADVN
     RCVDVLNRLI FKYAVVPLER FMLTMLLRDY EGNDAFYALL IVMLLVQRSE ELRSAVADCV
     AMLPSDYWHC QDWNDKYQAY QTKHAERTWS QVHVELSRAS LTPNDCPLPV YFGTRCLQML
     PVVDLLLQKL VESPAACLKF LDSTLSILGP LYRFHPYPVS FLYSTFRFYE KRLVESPAIK
     QKLALAVHGA CVPARDDHWL LSAEFVGWVS QATDRGPWVP DLNYYAALVR RLIDTFSEPR
     QQWSRKTDLR FVEFNNFQTH ALYSICIELM SLPVGVVDVG NALVTLVTHW HSLVDKNTVM
     YWVNAIGLIF SALPISYMEP FYQTILTTLC SDHMNSINTD VSNKLDFEKR SKLMEDCYPA
     RILALCHAVW LHSAPGYLQL LPQALRSTWI PHVRSEGQFL YVCHLVAPFL QRFYQERTKF
     TMDITTDLYQ MLYNVDCEVG DWKYEDLICD FFYHVKYMYV GDSVRQDTDR IIPMLRPSLQ
     QKLRYISFAQ GEQSAGTPFS VRKGSFGEDF IPEMINPIKL LGIQMVVWLQ RLPIFGETAQ
     HFWLAVTKLG DPVMTFSLYF PALFPFFGTA ALDMVIVGAF SEISNCILKW ILLDDRPYWW
     VHTAGVSGHL SHPLKQFQWT CETGPGSPSG HAMVSASVWF NLLYNLQSDL VLGDLSGICW
     LLYVVFLIAV SISRTYISAH FPDQVILGIV VGICIALVTR SLVGHRRRRW SNLIAFMIAL
     LLIALSVHEA HRFFGVDTHR SIELAAKYCH RAEWIHQSTT PLASFFRDVG VLISVAILLA
     NKSMFTNKNN KITSKFFSTK FAQALLGVGL NQLVALIPIG RLPTVLFYEL FVPENYIFWY
     DCHQALIVLL LTMVLDLDNF RVEKGGNVQA VRVSQQKRFQ SVDLVDQVVE TDQEWRRSRY
     LSDEWNRLKN LCSKEIGEKI KRKEPVDGNS TLPDSLTDKL QKLTVDQIRA LSVSQIKQLR
     LLIDHEMEKS YKLVENLEAV RFKALSQIGN LVHNSVPVSE NEDDNEIVRT WGELEVRKKY
     SQVDLGIMVD GYDSERGCSV AGSRGYFLKG PLVFLEQALI QLAMHMLFKK KYTPLYTPFF
     MRKEVMQEVA QLSDFDDQLY KVIGKSSEVK EEIAEEEKYL IATSEQPIAA YHRDEWISKE
     SLPLRYVGFS TCFRQEVGSH GRDTSGIFRV HQFEKVEQFC ITSPHDDASW EMLEEMISNA
     EMFYQTLNIP YRVVSIVSGE LNNAAAKKYD LEAWFPGSGA FRELVSCSNC TDYQSRRLRI
     RYEFVHMLNG TMCATTRTIC AILENFQEEN GIAVPEALRQ YMPDDYKDFI PFVKPAPKVE
     QAAKRGNKSA TAEKSTQYVG SKLFKFFLVT TRLELQ
//
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