ID A0A0V0RRV7_9BILA Unreviewed; 571 AA.
AC A0A0V0RRV7;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE RecName: Full=RNA polymerase II-associated protein 3 {ECO:0000256|ARBA:ARBA00040133};
DE Flags: Fragment;
GN Name=RPAP3 {ECO:0000313|EMBL:KRX17209.1};
GN ORFNames=T07_1846 {ECO:0000313|EMBL:KRX17209.1};
OS Trichinella nelsoni.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC Trichinellida; Trichinellidae; Trichinella.
OX NCBI_TaxID=6336 {ECO:0000313|EMBL:KRX17209.1, ECO:0000313|Proteomes:UP000054630};
RN [1] {ECO:0000313|EMBL:KRX17209.1, ECO:0000313|Proteomes:UP000054630}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ISS37 {ECO:0000313|EMBL:KRX17209.1};
RA Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT "Evolution of Trichinella species and genotypes.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the RPAP3 family.
CC {ECO:0000256|ARBA:ARBA00038275}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRX17209.1}.
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DR EMBL; JYDL01000091; KRX17209.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0V0RRV7; -.
DR STRING; 6336.A0A0V0RRV7; -.
DR Proteomes; UP000054630; Unassembled WGS sequence.
DR GO; GO:0005085; F:guanyl-nucleotide exchange factor activity; IEA:UniProtKB-KW.
DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
DR GO; GO:0007264; P:small GTPase mediated signal transduction; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR InterPro; IPR007515; Mss4.
DR InterPro; IPR011057; Mss4-like_sf.
DR InterPro; IPR011323; Mss4/transl-control_tumour.
DR InterPro; IPR025986; RPAP3-like_C.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR InterPro; IPR001440; TPR_1.
DR InterPro; IPR019734; TPR_repeat.
DR PANTHER; PTHR46423; RNA POLYMERASE II-ASSOCIATED PROTEIN 3; 1.
DR PANTHER; PTHR46423:SF1; RNA POLYMERASE II-ASSOCIATED PROTEIN 3; 1.
DR Pfam; PF04421; Mss4; 1.
DR Pfam; PF13877; RPAP3_C; 1.
DR Pfam; PF00515; TPR_1; 2.
DR SMART; SM00028; TPR; 3.
DR SUPFAM; SSF51316; Mss4-like; 1.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51796; MSS4; 1.
DR PROSITE; PS50005; TPR; 2.
DR PROSITE; PS50293; TPR_REGION; 1.
PE 3: Inferred from homology;
KW Guanine-nucleotide releasing factor {ECO:0000256|ARBA:ARBA00022658};
KW Protein transport {ECO:0000256|ARBA:ARBA00022927};
KW Reference proteome {ECO:0000313|Proteomes:UP000054630};
KW TPR repeat {ECO:0000256|ARBA:ARBA00022803, ECO:0000256|PROSITE-
KW ProRule:PRU00339}; Transport {ECO:0000256|ARBA:ARBA00022927}.
FT REPEAT 239..272
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT REPEAT 307..340
FT /note="TPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00339"
FT DOMAIN 431..521
FT /note="RNA-polymerase II-associated protein 3-like C-
FT terminal"
FT /evidence="ECO:0000259|Pfam:PF13877"
FT REGION 115..141
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KRX17209.1"
SQ SEQUENCE 571 AA; 65159 MW; 3FBDCF46108C1A73 CRC64;
LKFICNLCHM VLDACQSDFV PVTLTNRLCA LIRCDKNSNE APQRIEELIG ELQQLRKDIR
LCFRGVDCSP EEQVHRVRVL YKELLLKDRL VKHLKQISVQ LVNVQVNDSQ LLNEEISNPS
SDVGPSTEKA SSSNNNNGKK LSLSCPKCSC IILRENHGEQ VTVEKELPEL SLKADGTVDM
KTFTEFVRVD DIYDFENIGF SRNSNGVQYL LCAACEIGPL VMLVRKERKD ISEKDAQKAL
FEKESGNSFY VKKDYEKAIM CYSRSISADP FRPVVYCNRA MAYLKLKNYA EAYADCSKAL
TFDSTYVKAL YRRGMASKGL NNFDDAVEDF QHVLTLDPNN DIAKKELEEI VTISKVKPVE
NDPLLVYPVE NPDEKEYQKP LKVVIVRDAL KKSQFNSQQL ALSDESNVTK QSEQKISDYK
PNASIKITRI PKCYAELRAD WISIKEEPLA LADYILNIPC DCFSYLLGEF LDGEFVANLL
KAFMIKVNSE PQCSISCMER LELIGKAKRF DIVVLFLSRA DFIYLKTVLD KAKHVCSKDQ
AQRWDDLFKK YIETAINKND NEEEANVESF Q
//
