ID   A0A0V0VCA6_9BILA        Unreviewed;       948 AA.
AC   A0A0V0VCA6;
DT   16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT   16-MAR-2016, sequence version 1.
DT   24-JAN-2024, entry version 20.
DE   SubName: Full=Polynucleotide 5'-hydroxyl-kinase NOL9 {ECO:0000313|EMBL:KRX60977.1};
DE   Flags: Fragment;
GN   ORFNames=T09_9868 {ECO:0000313|EMBL:KRX60977.1};
OS   Trichinella sp. T9.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC   Trichinellida; Trichinellidae; Trichinella.
OX   NCBI_TaxID=181606 {ECO:0000313|EMBL:KRX60977.1, ECO:0000313|Proteomes:UP000054681};
RN   [1] {ECO:0000313|EMBL:KRX60977.1, ECO:0000313|Proteomes:UP000054681}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ISS409 {ECO:0000313|EMBL:KRX60977.1};
RA   Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT   "Evolution of Trichinella species and genotypes.";
RL   Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the Clp1 family. NOL9/GRC3 subfamily.
CC       {ECO:0000256|ARBA:ARBA00011003}.
CC   -!- SIMILARITY: Belongs to the peptidase C48 family.
CC       {ECO:0000256|ARBA:ARBA00005234}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KRX60977.1}.
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DR   EMBL; JYDN01000053; KRX60977.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0V0VCA6; -.
DR   Proteomes; UP000054681; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0008234; F:cysteine-type peptidase activity; IEA:InterPro.
DR   GO; GO:0051731; F:polynucleotide 5'-hydroxyl-kinase activity; IEA:InterPro.
DR   GO; GO:0016310; P:phosphorylation; IEA:UniProtKB-KW.
DR   GO; GO:0006508; P:proteolysis; IEA:InterPro.
DR   GO; GO:0006396; P:RNA processing; IEA:InterPro.
DR   Gene3D; 1.10.418.20; -; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.30.310.130; Ubiquitin-related; 1.
DR   InterPro; IPR045116; Clp1/Grc3.
DR   InterPro; IPR032319; CLP1_P.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR038765; Papain-like_cys_pep_sf.
DR   InterPro; IPR003653; Peptidase_C48_C.
DR   PANTHER; PTHR12755; CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P; 1.
DR   PANTHER; PTHR12755:SF3; POLYNUCLEOTIDE 5'-HYDROXYL-KINASE NOL9; 1.
DR   Pfam; PF16575; CLP1_P; 1.
DR   Pfam; PF02902; Peptidase_C48; 1.
DR   SUPFAM; SSF54001; Cysteine proteinases; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   PROSITE; PS50600; ULP_PROTEASE; 1.
PE   3: Inferred from homology;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   Kinase {ECO:0000256|ARBA:ARBA00022777, ECO:0000313|EMBL:KRX60977.1};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Reference proteome {ECO:0000313|Proteomes:UP000054681};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          103..280
FT                   /note="Ubiquitin-like protease family profile"
FT                   /evidence="ECO:0000259|PROSITE:PS50600"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:KRX60977.1"
SQ   SEQUENCE   948 AA;  109742 MW;  ED1B277CCD459961 CRC64;
     LNFNAVDLSS KQYYEIYHYF LFSLMTKIAG DFSAVELVSE DKKLDFMISK RLLSKIECYP
     DVVEAALQAS PTRQPQRQRV DGRNQTSEIG QRLAIRYNNV DCITLYEEHL TCLLHDNWLN
     DEVVDFFMVL LLELLNDYKN YDFCFLPASF LESIKRDRDH YVLRRLNVFE KKFVIIPVCH
     NYHWTLVILC YMNNMAAALN GRVEAGCSPF MLYVDSLHWS INKRILQELR HSFSRELGIR
     LNMPDIKLGD DELPYKIVRV PKQKNLSDCG VYLLHYTECF IRYAVQQSFS VPEFLDHSLK
     VFELSSGVAK RENLKNTILV LARHFKRPAT RNGIPSCKFV RKWWPLNDRS ASILPASMNC
     SESQNGRLRT PHDVEVMRKN LWKKFKTKIK EIPVKSEKVV FPNCSHEILE IQWNSDKFFQ
     RKFCSLLLLK TKQQLTFSGC VEFGLLLGHC HVFGFELEAS IPPKFHQVFS SYYGSPLVSF
     NTGKRTVEQS KSNTRHFFQF CNANFLKPLF TKEIRKRILS AAAVLIIRCV QLPLALGTSF
     ERLSMIKPQN CATNNNNNNS SSTISEKHAL IPGIFLLTKE AKLHAFSLTN EETVLFDKAA
     SQARRFSKLE RYSILFCGHI GSGKSTRMRY FANRLLSLKV KTYLLDLDLG QSEMTLPGCI
     SLTKLDEPLY GVNLKRMNKC EICYFYGEIS PSNRPEIYLQ LISRLYEEYV KITKYGVLLI
     NCNGLGLDIL LRIVDSLKPN EIFFFENCNI QMDEAVASRV ARVALEERRQ IRFVRTSHLR
     VLQALDKKLL RSHSICNYFA HNYKEWVNFF NAPTSKLQWK KCFIAVAHAD VDGKFIMCLL
     KASGVVGLCH LNDHNAEDPC EQHYCNDASL PAVAPRGAVP LTPLSSEQLD KVNFIVCGEL
     EIPQQIFNCQ SLLVSDDSKL TRKRNVQFMA DIWRHWKIKT KHKRRYAY
//