ID A0A0V1AGL2_9BILA Unreviewed; 2185 AA.
AC A0A0V1AGL2;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 24-JAN-2024, entry version 23.
DE SubName: Full=Protein RRP5-like protein {ECO:0000313|EMBL:KRY23957.1};
GN Name=PDCD11 {ECO:0000313|EMBL:KRY23957.1};
GN ORFNames=T12_2987 {ECO:0000313|EMBL:KRY23957.1};
OS Trichinella patagoniensis.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC Trichinellida; Trichinellidae; Trichinella.
OX NCBI_TaxID=990121 {ECO:0000313|EMBL:KRY23957.1, ECO:0000313|Proteomes:UP000054783};
RN [1] {ECO:0000313|EMBL:KRY23957.1, ECO:0000313|Proteomes:UP000054783}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ISS2496 {ECO:0000313|EMBL:KRY23957.1};
RA Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT "Evolution of Trichinella species and genotypes.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC {ECO:0000256|ARBA:ARBA00004604}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRY23957.1}.
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DR EMBL; JYDQ01000001; KRY23957.1; -; Genomic_DNA.
DR STRING; 990121.A0A0V1AGL2; -.
DR Proteomes; UP000054783; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR Gene3D; 2.60.120.200; -; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 5.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR013320; ConA-like_dom_sf.
DR InterPro; IPR003107; HAT.
DR InterPro; IPR005052; Lectin_leg.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR045209; Rrp5.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR008847; Suf.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR23270; PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5; 1.
DR PANTHER; PTHR23270:SF10; PROTEIN RRP5 HOMOLOG; 1.
DR Pfam; PF03388; Lectin_leg-like; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF05843; Suf; 1.
DR SMART; SM00386; HAT; 5.
DR SMART; SM00316; S1; 9.
DR SUPFAM; SSF49899; Concanavalin A-like lectins/glucanases; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 4.
DR SUPFAM; SSF48452; TPR-like; 2.
DR PROSITE; PS51328; L_LECTIN_LIKE; 1.
DR PROSITE; PS50126; S1; 6.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000054783};
KW rRNA processing {ECO:0000256|ARBA:ARBA00022552};
KW Signal {ECO:0000256|SAM:SignalP}; Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT SIGNAL 1..21
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 22..2185
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5006874532"
FT TRANSMEM 310..330
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 40..267
FT /note="L-type lectin-like"
FT /evidence="ECO:0000259|PROSITE:PS51328"
FT DOMAIN 512..583
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 783..853
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 873..945
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 1079..1149
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 1393..1465
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 1670..1742
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
SQ SEQUENCE 2185 AA; 244331 MW; B1C0904835DD57C6 CRC64;
MGKTSVEEMF VLLLIVVWCN SFTVSSTTIP SGTPVDEQRG FNRREHSLSK PYQNTGFNIP
FWNFGGSTIV TSDYVRLTPD SPSRQGFLWN TIPVVVRDWE LEVTFSVHGV EKGLFGDGMA
IWYAEEPGVL GPVFGSKDMF RGLAVFLDTY TNHQDAHNHA HPYISAMVNN GSLRYDHDRD
GTHTQLGGHD SGCTAKFRNK EFPTRILIRY VGDTLSVYTD ILGKAVWDLC FAVDRVSLPK
RYFFGMTAAT GDLSDAHDII SVRMFEIEYQ RVERAGYDTR GAVPQAEYIS APRDHVEDNP
PPSKLSTLKY GFLFILGLIG IGILVVAASG KTMIEVAFPR GGEHRDQINF KKRKSLLPPE
LHGRRKKFKT LDKLKSKAAS VSENNHKVDD DFASRVWTKK LNNETCVAGL LTVACVHYCW
DTEVNVEMPG NMNGILKAGS VSQSFVDHVQ AKREDEEAAT LASLFEPAEL ICVKVIDKEM
RQFASGKMHT TWLVTTNPAD LNAHITPSTL RKHAVIGCAV RSVEEKGYLM DLGFQNVHGF
LSFAEACRFY PENKQLPIGK PILCTVVEPA AATGGRVVQL SCLNGQLNGT DVPKIDENFP
KSLLMPGLLC RTTVQQHCQQ GLICKLNSDL YGWLSLADSP KRRKRALANE QSLQGAVELM
VTYSLPQSSM VGFSSADYLL RRTRLVERFS FDAKGSLQTC KVRRSTPQKV QFITDSGAIV
NVANCRLKKP VGKKKNSTEK YKLATKHRVR MIGMSTLKMV YHGSCLVCDV RQPFSKIDET
AVGLRVTAKV VRVSDTAALV KVFHTFDGKI DALHFSDGLV SVGCRAKFVV GQTVPTRVLA
VDKDLQRLYL TAKRSLVKSD LPLLSAYTAE AVGNVYDGFV VQLLERGGVL IGFYNNVRGV
LDERAFQLAG YQKQSPTDVY HVGQVVRVLV VRVDVDKRRI DLALPECSAR GLQWMLGCSG
KVSNSKLEAD VGQCARAGGS KRKPPPFFEL LKAEVKALRD DWLLVELVEY GVSARLPSAH
LTDSLTTGHL LLASFRVGDK LDVVLFNNVK GLVVTAKPSL LHLMRNMQAP RSLDDLKCGQ
LVTGVLARVH PEHGYFIDLP GNMSALCPKS KVEWKCETDA GIANLIGATV VGRVMTLNPQ
AGKLIINLKL KKCLLNGLHT SIALLKQYLE ERELLSQRFR NPSNTDWKLR LLSKYQIGQL
VECTVGMVVE SGLICTVEDG VPGIFVSELL DPHRNVEYAV GSSLIGLVVC VNYSERCLEL
VAMKQLLANF RQVALRRRRR QPAVGDSLTA TVLVANADCV LLSTAGHGLC YMPARLHYND
LSMLRFKNPD KRKLRVHVQA YTTSGQCLVS SVRDEQLCSK IERRLRSAVS VQPSIESGTA
PVIEEKGVAM AVGRLYSASV LSVDKRYVHL FIAGRYRGRI FATELDEQFL QDGSEPLKTV
RLGTTVTVKV IGTKRIRKGG SLMAECTMKS SKLFSKRNKK TIIGYKENFV VGEELNVLVV
ERKRHHFNVV VNPRWSGEVS FYTVDPRSAW RNGQLRKVYV LDVDVEKRWL KLSALKPAMV
ELKENGYTFG KLVSRDDKDL STKLCFSMLG GARGVASLVD ICDNYDHAVD KWRLLQVESY
YKLFVVGKLE NNFWHVSLRP SLTGENSFEA NNATIRDDPL YSLASELAVG NVYRGFVSKV
RHYKKGLTVL LGHELFGNVP CGLISECTDA VRLDQTFPIG TVVTVKVMNL DRSNGNLTLS
MLSKDTGLPD QVPEKCRKLL QSDDSISSQA QLVLNKAEES PAALPLRACS WFESAASKRK
KSSDKKKVPL SEIEGEIAFD LESTTFSAKT LIDVSLNADN VSDGTLMVNG KHGAFIANGN
QCSSAASGEN DYELEVAERE GKSKLELDRL DEEEVLKKEL MLMDPERPIE TVEDYDRALV
ASPSSSMLWI RYMAYFVQCN EIDKARSVAS KALKTIAYNE EKERFNVWIA LMNLENEYGT
GETMDETVRN ALLVNDQQQV YLQLLKIYDR SKKLDAADAV TEVLLKKYRS QFDVWITVGK
HFMQTNRAEK AHAIMERAMK SLPFNMHVDL MSRFAQMEFK FEGDVERGCT IFENILNDHP
RRFDIWLVYV DLMAKHRNID EARPLLRRVT SLKMSAHKMR SFFKKWLELE NRYGTAETVA
DVKSRATDYV NNVFSDFDEL KQDYQ
//
