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Database: UniProt
Entry: A0A0V1BJ13_TRISP
LinkDB: A0A0V1BJ13_TRISP
Original site: A0A0V1BJ13_TRISP 
ID   A0A0V1BJ13_TRISP        Unreviewed;      1366 AA.
AC   A0A0V1BJ13;
DT   16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT   16-MAR-2016, sequence version 1.
DT   24-JAN-2024, entry version 27.
DE   RecName: Full=Splicing factor YJU2 {ECO:0000256|HAMAP-Rule:MF_03226};
GN   Name=Slc26a5 {ECO:0000313|EMBL:KRY36882.1};
GN   ORFNames=T01_13928 {ECO:0000313|EMBL:KRY36882.1};
OS   Trichinella spiralis (Trichina worm).
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC   Trichinellida; Trichinellidae; Trichinella.
OX   NCBI_TaxID=6334 {ECO:0000313|EMBL:KRY36882.1, ECO:0000313|Proteomes:UP000054776};
RN   [1] {ECO:0000313|EMBL:KRY36882.1, ECO:0000313|Proteomes:UP000054776}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ISS3 {ECO:0000313|EMBL:KRY36882.1};
RA   Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT   "Evolution of Trichinella species and genotypes.";
RL   Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Part of the spliceosome which catalyzes two sequential
CC       transesterification reactions, first the excision of the non-coding
CC       intron from pre-mRNA and then the ligation of the coding exons to form
CC       the mature mRNA. Plays a role in stabilizing the structure of the
CC       spliceosome catalytic core and docking of the branch helix into the
CC       active site, producing 5'-exon and lariat intron-3'-intermediates.
CC       {ECO:0000256|HAMAP-Rule:MF_03226}.
CC   -!- SUBUNIT: Component of the spliceosome. Present in the activated B
CC       complex, the catalytically activated B* complex which catalyzes the
CC       branching, the catalytic step 1 C complex catalyzing the exon ligation,
CC       and the postcatalytic P complex containing the ligated exons (mRNA) and
CC       the excised lariat intron. {ECO:0000256|HAMAP-Rule:MF_03226}.
CC   -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004141}; Multi-
CC       pass membrane protein {ECO:0000256|ARBA:ARBA00004141}. Nucleus
CC       {ECO:0000256|HAMAP-Rule:MF_03226}.
CC   -!- SIMILARITY: Belongs to the CWC16 family. YJU2 subfamily.
CC       {ECO:0000256|HAMAP-Rule:MF_03226}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KRY36882.1}.
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DR   EMBL; JYDH01000038; KRY36882.1; -; Genomic_DNA.
DR   Proteomes; UP000054776; Unassembled WGS sequence.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0071006; C:U2-type catalytic step 1 spliceosome; IEA:UniProtKB-UniRule.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0000349; P:generation of catalytic spliceosome for first transesterification step; IEA:UniProtKB-UniRule.
DR   GO; GO:0031110; P:regulation of microtubule polymerization or depolymerization; IEA:InterPro.
DR   GO; GO:0055085; P:transmembrane transport; IEA:InterPro.
DR   CDD; cd07042; STAS_SulP_like_sulfate_transporter; 1.
DR   Gene3D; 6.10.280.30; -; 1.
DR   Gene3D; 3.30.750.24; STAS domain; 1.
DR   HAMAP; MF_03226; YJU2; 1.
DR   InterPro; IPR007590; Saf4/Yju2.
DR   InterPro; IPR011547; SLC26A/SulP_dom.
DR   InterPro; IPR001902; SLC26A/SulP_fam.
DR   InterPro; IPR002645; STAS_dom.
DR   InterPro; IPR036513; STAS_dom_sf.
DR   InterPro; IPR000956; Stathmin_fam.
DR   InterPro; IPR036002; Stathmin_sf.
DR   InterPro; IPR043701; Yju2.
DR   PANTHER; PTHR11814:SF105; STAS DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR11814; SULFATE TRANSPORTER; 1.
DR   Pfam; PF04502; Saf4_Yju2; 1.
DR   Pfam; PF01740; STAS; 1.
DR   Pfam; PF00836; Stathmin; 1.
DR   Pfam; PF00916; Sulfate_transp; 2.
DR   SUPFAM; SSF52091; SpoIIaa-like; 1.
DR   SUPFAM; SSF101494; Stathmin; 1.
DR   PROSITE; PS50801; STAS; 1.
DR   PROSITE; PS51663; STATHMIN_3; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW   Metal-binding {ECO:0000256|HAMAP-Rule:MF_03226};
KW   mRNA processing {ECO:0000256|HAMAP-Rule:MF_03226};
KW   mRNA splicing {ECO:0000256|HAMAP-Rule:MF_03226};
KW   Nucleus {ECO:0000256|HAMAP-Rule:MF_03226};
KW   Reference proteome {ECO:0000313|Proteomes:UP000054776};
KW   Spliceosome {ECO:0000256|HAMAP-Rule:MF_03226};
KW   Transmembrane {ECO:0000256|ARBA:ARBA00022692, ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|ARBA:ARBA00022989,
KW   ECO:0000256|SAM:Phobius}; Zinc {ECO:0000256|HAMAP-Rule:MF_03226}.
FT   TRANSMEM        870..893
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        945..964
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        976..997
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        1071..1098
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        1104..1123
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        1135..1166
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          1189..1358
FT                   /note="STAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50801"
FT   REGION          1243..1265
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          451..503
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        1249..1265
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   BINDING         128
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_03226"
FT   BINDING         131
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_03226"
FT   BINDING         165
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_03226"
FT   BINDING         168
FT                   /ligand="Zn(2+)"
FT                   /ligand_id="ChEBI:CHEBI:29105"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_03226"
SQ   SEQUENCE   1366 AA;  154529 MW;  A618EA5B50F68AEB CRC64;
     MYVFAFSVVK STPPQTSVET LNDVEFLSQK STCPYVSVKI EKVVYMRFCD VGKGNNEIEG
     KSCMSLILTV MEYCSLYCFF KAAMTGTERK ALNKYYPPDF DPRKLPKVSI PRNRQYVIRV
     MAPFNMKCNT CGEYIYKGKK FNARRETVED EDYIGLSIFR FYIRCPQCLA EITFKTDLKN
     CDYAEEHGAT RLFEAEKMLI NQLSVMEEEA EKEKGNAMLM LEKRTKMSRF EMEALERLED
     LKELNKRQAT VDYDALIEQA KEEELAEILH QKEEEDRYVQ SVFENTIDKS GPSSSSLLIK
     RLPDLSDEET DKKLETSTFV VEKKPRISKQ KLFLRGVVKK KDTSVVEKKK TFSQLGNDST
     APDTGSLGLL GTYGGGICKL ILKSFYACCG FFRLAGSQMK ISLLSMNPES ESSLVMNTSS
     SGNLSFELIL RPPTKHAPAN LSSPCNLKTT LQEIEGKLKA AEERRLNVEA EKVEKAKIEE
     RLLEAAERRK ALLQKFQEET EKEIQNRAKV TSLNREKLFE ERIEKIKDHE KHVEEVRRSR
     GKLSPNTKSE MEADLAYVKS LEKMTIAELE EKLTEKDKLI DEIQTAMKGE IESGQFDATF
     RLAEAKAYRR IISGIIKENL LIFFVWITVI LRWTFQIVQL FGSVCHVLCI TFELQITIIK
     YPYCRCAQCV KNSSVFSVEK SQHQVVIHRK VYNLEEFDEE FDKRYVDLTL IGRAKKTLLN
     IWNEGFSFFQ RLLSARFPCI KWLLQYNVKK DLPTDVLSGI TVGVFNIPQG MAYGMLAGTS
     AANGLYTSFY PPLIYSIFGS SNQISIGTFS VISLMTAGVI AKFSHFTCKD FGSYFSHNAT
     VSTPENWFCG SSSSRCTPDV NEVTEIAMSL AFLVGVFQIL LGLMNMGFLS VYLSDQLVEG
     LTTGSAVLVF TSQIRHVFGI KGLPDTGNPL DIIKFYGCFF IKIDYFNWLA LVISAICILS
     IIVVKQFLDP PFKRYFKFSL PFELFLVIAT TAISYGLNLN EAYSIDIVGK VPKGLVYPRL
     PRWDLFPELA SDAIAISVVI YSICISLAKL NGSPLEWSTW DLRFSLANAP ALHLVELAGV
     FAAAVVMIVL LFLAGLLTHL PKCVLASVII VALKGMFFQM RSLPKLWRCS KPDFLIWVVS
     FCSVVLLDIT YGLLVSVAFA LLTIVFKSQP DSICLGRIPK TELYRGLNAY AKAEEIPGVK
     IYRFDSPLFF ANVENFRQRL YECTGIDPID QKVADDLSKK HKNYGSMESR STEKQPNVNS
     SEWPVTESKT DASSIVACPS CSANLHTIII DCSSFPFVDL MGVESMKQIY LEYKKIGIAV
     KFAYCKVSLR QILERTDFFQ TVPKARLYPS IEDAVAVATC CSCTSF
//
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