ID   A0A0V1MYQ5_9BILA        Unreviewed;      1850 AA.
AC   A0A0V1MYQ5;
DT   16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT   16-MAR-2016, sequence version 1.
DT   24-JAN-2024, entry version 22.
DE   SubName: Full=Protein RRP5-like protein {ECO:0000313|EMBL:KRZ76897.1};
GN   Name=PDCD11 {ECO:0000313|EMBL:KRZ76897.1};
GN   ORFNames=T10_12386 {ECO:0000313|EMBL:KRZ76897.1};
OS   Trichinella papuae.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC   Trichinellida; Trichinellidae; Trichinella.
OX   NCBI_TaxID=268474 {ECO:0000313|EMBL:KRZ76897.1, ECO:0000313|Proteomes:UP000054843};
RN   [1] {ECO:0000313|EMBL:KRZ76897.1, ECO:0000313|Proteomes:UP000054843}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ISS1980 {ECO:0000313|EMBL:KRZ76897.1};
RA   Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT   "Evolution of Trichinella species and genotypes.";
RL   Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC       {ECO:0000256|ARBA:ARBA00004604}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KRZ76897.1}.
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DR   EMBL; JYDO01000024; KRZ76897.1; -; Genomic_DNA.
DR   Proteomes; UP000054843; Unassembled WGS sequence.
DR   GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR   Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 5.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 1.
DR   InterPro; IPR003107; HAT.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   InterPro; IPR045209; Rrp5.
DR   InterPro; IPR003029; S1_domain.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   PANTHER; PTHR23270; PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5; 1.
DR   PANTHER; PTHR23270:SF10; PROTEIN RRP5 HOMOLOG; 1.
DR   SMART; SM00386; HAT; 5.
DR   SMART; SM00316; S1; 7.
DR   SUPFAM; SSF50249; Nucleic acid-binding proteins; 4.
DR   SUPFAM; SSF48452; TPR-like; 2.
DR   PROSITE; PS50126; S1; 5.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000054843};
KW   rRNA processing {ECO:0000256|ARBA:ARBA00022552}.
FT   DOMAIN          454..524
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   DOMAIN          544..616
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   DOMAIN          743..811
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   DOMAIN          1056..1128
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
FT   DOMAIN          1332..1404
FT                   /note="S1 motif"
FT                   /evidence="ECO:0000259|PROSITE:PS50126"
SQ   SEQUENCE   1850 AA;  207547 MW;  B54F6B622A7C4529 CRC64;
     MMEVAFPRGG EHRAQINFKK RKSFLPPDSE GRRKKLKMSY KLKSKQVTVS ENNHKVDEDF
     ASRVWTKKLN NETCVTGLLT VACVHYCWDT EVNVEMPGNM NGILKAGSVS QAFVDHVQAK
     CQDEEAAATL ASLFEPAELI CVKVIDKEMR QFASGKMHTT WLVTTNPADL NAHITPSTLC
     KHAVIGCAVR SVEEKGYLMD LGFQNVHGFL SFIEARRFYP ENKQLPIGKP ILCTVVEPAA
     ATGGRVVQLS CLNGQLNGTN VPKIEENFPK SLLMPGMLCR ATVQQHCQQG LICKLNSDLY
     GWLSLADSPE RRKRALANGT MSLHRVVEVM VTCSLPQSSM VGFSSADYLL RRTRLVGRFS
     FDAKGSLQIC KVRRSTLQKV QLITDSGAIV NVAKCRLRQS VGKKKKQFTE KYKPATKHRV
     RMIGMSTLKM VYHGSCLACD VRQPFSKIEE AELGLRVTAK VVRVLDAAVL VKVFHTFDGK
     IDALHFSDGP VSVGCRAKFT VGQTVPTRVL AIDKDLQRLY LTAKPSLVKS DLPPLSAYTA
     EAEGNLYDGF VVQFLQRNAV LIAFYNNVRG VLNERAFQLA GYQKQSPKDA YHVGQVVRVL
     VVRVDVDKQR IDLALPECSA RGLQWMLERS GKVSNSKPEA GVGSKRRLPP FFELLKAEVK
     ASRDDWLLVE LLEYGVSARL PSAHLTDSLT TGHLLLASSQ VGDKLDVVLF NSVKGLVVTA
     KPSLLHLVRS MQAPKSLDDL KCGQLVTGVL ARVHPDHGYF VDLPGNMSAL CPKTKVDWKC
     ETDSALLIGA TVVGRVMTVN PQSGKLIVNL KRKKCLLNGL HTSIALLKQY LEERELLSQR
     FRSVGQSDWK RRLLSEYQIG QLVECRVGMV VESGLICSTV QDGVPGIFVS ELLDPHWNVE
     YAVGSSLTGL VVCVNYSERC LELTSMKQLL ANFRQVAQCR RRRRPAVGES LTATVLVANA
     DCVLLSTSGH GLCYMPARLH YNDLCLPRFN NSDKRQLRVH VQTYTTSGLC LVSSVRDEQL
     CRKLERRLRS TVSVQPSDQS GTAPVIEEKG VAMAVGRLYS ASVLSVDKRY VHLSIAGRYR
     GRIFATELED QFSQDGSEPL KTIPLGTTVT VKVIGTKRVR KGGSLMAECT TKSSKLFSKR
     NKKSIIGYKE NFVKGEELNV LVVKQKRHHF SVVVNPRWSG EVSFYTVDPR SAWRNGQLRK
     VYVLDVDVEK RWLKLSALKP AMVELKENGH AFGKLFSRDA DDLSTKLCFS MLGGARGVAS
     LVDICDDYDY TVERWRLLRV ESYYKLFLVG KLENNSWHVS LRPSLTGENN AEVNNATIRD
     PLYSSTSELA IGNLYRGFVS KVRHYKKGLT VLLGHELFGN VPCELISECT DTVRLDQTFP
     VGTVVTVKLM SLDKSSGNLT LSMLSKDTGL ADQVPEKCRK LQCDHSIISS QAQLVLNKAE
     ESPVTVPLQA CSWFESASER KKSSDQKKVQ LSEIEEEIAF DLESTTFSAK TLIDVSLNTD
     DNVSDEMLMV NGKHGALFNA NGGNQCSLAA SGENDYELEV VAEREVKSKL ELDRLDEEEV
     LKKELMLMDP ERPIETVEDY DRALIASPSS SMLWIRYMAY FVQCNEIDKA RSVALKALKT
     IAYNEEKERF NMWIALMNLE NEYGTGETMD ETVRNALLVN DQQQVYLQLL KIYDRSKKLD
     AADAVTEVLL KKYRSQFDVW ITVGKHFMQT NRTDKAHATM ERAMKSLPFN MHVDLMSRFA
     QMEFKFGGDV ERGCTIFETI LNDHPRRFDI WLVYVDLIAK HRSIDEARPL LRRVTSLKMS
     AHKMRSFFKK WLELENRYGT AETVAEVKNR ATDYVNNVFS DFDELKQDYQ
//