ID A0A0V1N073_9BILA Unreviewed; 1541 AA.
AC A0A0V1N073;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE SubName: Full=RNA-binding protein 26 {ECO:0000313|EMBL:KRZ77338.1};
GN Name=swp-1 {ECO:0000313|EMBL:KRZ77338.1};
GN ORFNames=T10_9180 {ECO:0000313|EMBL:KRZ77338.1};
OS Trichinella papuae.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC Trichinellida; Trichinellidae; Trichinella.
OX NCBI_TaxID=268474 {ECO:0000313|EMBL:KRZ77338.1, ECO:0000313|Proteomes:UP000054843};
RN [1] {ECO:0000313|EMBL:KRZ77338.1, ECO:0000313|Proteomes:UP000054843}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ISS1980 {ECO:0000313|EMBL:KRZ77338.1};
RA Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT "Evolution of Trichinella species and genotypes.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: May be involved in the turnover of nuclear polyadenylated
CC (pA+) RNA. {ECO:0000256|ARBA:ARBA00043866}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRZ77338.1}.
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DR EMBL; JYDO01000020; KRZ77338.1; -; Genomic_DNA.
DR STRING; 268474.A0A0V1N073; -.
DR Proteomes; UP000054843; Unassembled WGS sequence.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006397; P:mRNA processing; IEA:InterPro.
DR CDD; cd12257; RRM1_RBM26_like; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 1.20.1390.10; PWI domain; 1.
DR Gene3D; 1.10.10.790; Surp module; 2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR002483; PWI_dom.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR045137; RBM26/27.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000061; Surp.
DR InterPro; IPR035967; SWAP/Surp_sf.
DR InterPro; IPR019147; SWAP_N_domain.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR14398; RNA RECOGNITION RRM/RNP DOMAIN; 1.
DR PANTHER; PTHR14398:SF0; ZINC FINGER PROTEIN SWM; 1.
DR Pfam; PF09750; DRY_EERY; 1.
DR Pfam; PF01480; PWI; 1.
DR Pfam; PF01805; Surp; 2.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM01141; DRY_EERY; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00648; SWAP; 2.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; CCCH zinc finger; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 2.
DR SUPFAM; SSF109905; Surp module (SWAP domain); 2.
DR PROSITE; PS50128; SURP; 2.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|PROSITE-
KW ProRule:PRU00723}; Reference proteome {ECO:0000313|Proteomes:UP000054843};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PROSITE-ProRule:PRU00723};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00723}.
FT DOMAIN 182..224
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
FT DOMAIN 340..380
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
FT DOMAIN 897..925
FT /note="C3H1-type"
FT /evidence="ECO:0000259|PROSITE:PS50103"
FT ZN_FING 897..925
FT /note="C3H1-type"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00723"
FT REGION 136..161
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 772..903
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 974..1010
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1165..1229
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1514..1541
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 1271..1308
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 1358..1395
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 777..813
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 836..858
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 859..880
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 889..903
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 978..1001
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1193..1229
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1517..1541
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1541 AA; 174401 MW; 6CAF504C9F95986E CRC64;
MHRNSSLQEE SLDEFLAFGY PCKLFDSRED RDCADESADL IPLHCNRKIL VDRIMSLFGY
QMVFITEFDC RLQLSNLEKY DASKVEQSLL IADRSFEALL DAERYRDFKL TYETPKVENE
KRMGTEIYFN YDNLESKPQQ GCQPKEEAEG EEDEQKEQFV PPAELKVPVG VTLPKTVKEG
IIIEKTAIFI AEQGSQMEII VNAKQKSNPQ FRFLDWNHPL NKYYKHVLKM IKEKRYTPVV
VKKDPTPDSE SDSDDSEHYL HPSLMGGAAK IAVAKDTEPL SLPKTSYRLG EENDVYSELF
NGLVAVCPQL AAAVSTAKEK ETAGSAEGLL LPPPPDLYPV VDRVAAYVAR NGPQFEQILR
ERNDPRFSFI DPSNKYNPYY MALLQNYESE DYIAHLQQNV QNQSVEGVPM SLNYLSYYGF
VPQPPPPPRS TPPPPAVENQ EQTLNLNKTK TIYCSDHLTS AATTISSVSE KPTEMGSVGP
VCFTIKAKNP EETCLIVDKA NLDADLDETI NLPLQSDSDV LSDCAEKFDR KFVDGGGDAE
ESAVKSVDEY MHREITAFPE VGKKEQKNVE ENLNLKQARR YRAKKFVDEF AKKIHKREKS
CVDEEKVKKH GHVSEGELCD SESSESTLIG TSSNACYGID VGDPSQHPAV DIEKVQKIVD
EEEKEEEDQE KERLDHDHVP PLRIYCIITK MFVDQPEQLK NWLINTLSPL CDADPAALAK
YVMALLKKDK TEADLKHFCL DQLDVFLQKE TKKFVDELFL ALKSKVYIVT DKESQPSSTK
EVPKKRSLEP SRNEKPSADE HLKSRRVDSH SASRPVRRYA SSPKARSKSS ERSKGKNDTT
SVTQNKASSS TVRDRVKAHW SPSNNKEQRK STHKDSNEAA GNAENDSVQS IRSEKEKRKK
ARCRDYDEKG YCMLGDNCVY DHGPDPVVVE DVALSSMIPM KDGTGRSNKS LPTPPPNFSV
PPPGYVPIPP PPPGVDSNFQ TEGYNPEAPS LTSASTGTAV PLPPPYTQPP PPIWAQPPPV
LRPFGPRQMA NYAQLRVNFP RARQLITLSE DRPNFDNFPQ SSIRTQHKSV GQINMRKRVA
VDQINRHNRT LEVRRIPQPL NTITKLNEHF SQFGHITNIE VCYEGDPQAA LITYMTRPQA
LAAYKSTDPI LNNRFIRVFW HNQKDGPAAE DTGTDQSSRP ARIPIKDRLE LPVKSSSNGT
SSHDEVTFKS ETAANAGNNT ISTTMNKDQQ QMDDDAFLTK SIRLHNADAE LKNAAATAVA
TKGENTKRIL KKRLELQRAE TELFNRQLEQ EKLLLKKLEN CKDQTKKELI LKTLKKLEIS
LMTTKKNLES RDFSKFVKRS KTEVQRDVLD AELELITKKK AGEDISEIAV RLQNLRREMQ
QLNDAESNNK QCRNSTYRPE RNRRIPRSAV LDLRSRSILI TDFCMEHKDA LIEHLQQFGT
LRDIDFYPLT DPTVGKVIAS FYDRKEAERA FTDGKVFKDQ LLNMTWAVED KDAMAAALTA
GSKTDLSAKA LLKTLDSPDD DDDDDLFEEN EREEIEEEQL A
//
