ID A0A0W7YT93_9BURK Unreviewed; 819 AA.
AC A0A0W7YT93;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 24-JAN-2024, entry version 23.
DE RecName: Full=LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411};
DE Flags: Precursor;
GN Name=lptD {ECO:0000256|HAMAP-Rule:MF_01411};
GN ORFNames=AS359_11445 {ECO:0000313|EMBL:KUF38341.1};
OS Comamonas kerstersii.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Comamonas.
OX NCBI_TaxID=225992 {ECO:0000313|EMBL:KUF38341.1, ECO:0000313|Proteomes:UP000053300};
RN [1] {ECO:0000313|EMBL:KUF38341.1, ECO:0000313|Proteomes:UP000053300}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=12322-1 {ECO:0000313|EMBL:KUF38341.1,
RC ECO:0000313|Proteomes:UP000053300};
RA Ming D., Wang M., Hu S., Zhou Y., Jiang T.;
RT "Complete genome sequence of a multi-drug resistant strain Acidovorax sp.
RT 12322-1.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Together with LptE, is involved in the assembly of
CC lipopolysaccharide (LPS) at the surface of the outer membrane.
CC {ECO:0000256|HAMAP-Rule:MF_01411}.
CC -!- SUBUNIT: Component of the lipopolysaccharide transport and assembly
CC complex. Interacts with LptE and LptA. {ECO:0000256|HAMAP-
CC Rule:MF_01411}.
CC -!- SUBCELLULAR LOCATION: Cell outer membrane {ECO:0000256|HAMAP-
CC Rule:MF_01411}.
CC -!- SIMILARITY: Belongs to the LptD family. {ECO:0000256|HAMAP-
CC Rule:MF_01411}.
CC -!- CAUTION: Lacks conserved residue(s) required for the propagation of
CC feature annotation. {ECO:0000256|HAMAP-Rule:MF_01411}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KUF38341.1}.
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DR EMBL; LPXH01000040; KUF38341.1; -; Genomic_DNA.
DR RefSeq; WP_058880496.1; NZ_LPXH01000040.1.
DR AlphaFoldDB; A0A0W7YT93; -.
DR STRING; 225992.B5M06_05950; -.
DR Proteomes; UP000053300; Unassembled WGS sequence.
DR GO; GO:0009279; C:cell outer membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IEA:UniProtKB-UniRule.
DR GO; GO:0015920; P:lipopolysaccharide transport; IEA:InterPro.
DR GO; GO:0010033; P:response to organic substance; IEA:InterPro.
DR HAMAP; MF_01411; LPS_assembly_LptD; 1.
DR InterPro; IPR020889; LipoPS_assembly_LptD.
DR InterPro; IPR007543; LptD_C.
DR InterPro; IPR005653; OstA-like_N.
DR PANTHER; PTHR30189; LPS-ASSEMBLY PROTEIN; 1.
DR PANTHER; PTHR30189:SF1; LPS-ASSEMBLY PROTEIN LPTD; 1.
DR Pfam; PF04453; LptD; 1.
DR Pfam; PF03968; LptD_N; 1.
PE 3: Inferred from homology;
KW Cell outer membrane {ECO:0000256|HAMAP-Rule:MF_01411};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|HAMAP-Rule:MF_01411};
KW Reference proteome {ECO:0000313|Proteomes:UP000053300};
KW Signal {ECO:0000256|HAMAP-Rule:MF_01411}.
FT SIGNAL 1..34
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01411"
FT CHAIN 35..819
FT /note="LPS-assembly protein LptD"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01411"
FT /id="PRO_5008997891"
FT DOMAIN 75..211
FT /note="Organic solvent tolerance-like N-terminal"
FT /evidence="ECO:0000259|Pfam:PF03968"
FT DOMAIN 316..708
FT /note="LptD C-terminal"
FT /evidence="ECO:0000259|Pfam:PF04453"
SQ SEQUENCE 819 AA; 92118 MW; 6711F4A416A1216F CRC64;
MSPHAFSLPS PSTLFRLRPL AASVAMVWAA AAHAQAQTPA LSSWDTALPA PQLKSSSQLA
EQLPAELRDQ LPSHIRAEQI SGQADINVVL EGGAELRRGD TIIRADRVEY SLPDDTVRAQ
GNVHINSGGN IYQGTSLKLQ VDAFQGDFNE ATYQFLATQG HGDAERIEFL DRENSVVHQA
TYTTCLRDDS ASWEPDWMIR AKRITLDRNE DVGVAYGGIL EFKGVPILPI PAISFPLSDK
RKSGLLPPTI GVDSVSGFEY SQPYYWNIAP NRDATITPAI MSKRGVSLNT EFRYLEPNYD
GNLDLQYMPN DKLRDRDRWG YHWRHDTALN SPFGALGLKW NLLRVSDNDY WRDFSRLPGD
SSDSRYSDQR LLSSDGRLSW AGGNHRVSLY AQQWQVLQDP EALIAPPFNR MPQLQWSYDT
TQWATQGWDV ALRADTTRFE ADTWYGAKNL ANGQRSFAHF AASRPFLLPG GFVTPSVKLQ
ANHYQLSASQ TQLDAVNSGY ARSRSFAIPT LSLDSGLVFE RDTSAFGRSY VQTLEPRAFY
TYTPYRDQSM VPLYDTALTD FNFGSIYSSN SYTGYDRIAD NNMVTVGLTT RYLDPDDGAE
VARLGFAQRY RLENQRVSLG YDKPGTKGWS DILIGGGVNW SKRWSTDAMV QYNQDTHNTT
RSSVSGRYSP GPYKVLSAAY RYQRENSMPM VNEGSEQIDL GWQWPLNQGR KDQFGQATGG
GRWYSVGRLN YSMYDKKLVD AIVGFEYDSC CWIGRVVVER VQNSRTDSNT RLLFQIEFVG
FSRLSLGADP MRSLKEFVPG YRPLRSSDGT VPSRFSNYD
//
