ID A0A103Y5U6_CYNCS Unreviewed; 527 AA.
AC A0A103Y5U6;
DT 13-APR-2016, integrated into UniProtKB/TrEMBL.
DT 13-APR-2016, sequence version 1.
DT 27-MAR-2024, entry version 27.
DE SubName: Full=Chromo domain-like protein {ECO:0000313|EMBL:KVI03089.1};
GN ORFNames=Ccrd_018618 {ECO:0000313|EMBL:KVI03089.1};
OS Cynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae;
OC Carduinae; Cynara.
OX NCBI_TaxID=59895 {ECO:0000313|EMBL:KVI03089.1, ECO:0000313|Proteomes:UP000243975};
RN [1] {ECO:0000313|EMBL:KVI03089.1, ECO:0000313|Proteomes:UP000243975}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=2C {ECO:0000313|EMBL:KVI03089.1};
RX PubMed=26786968; DOI=10.1038/srep19427;
RA Scaglione D., Reyes-Chin-Wo S., Acquadro A., Froenicke L., Portis E.,
RA Beitel C., Tirone M., Mauro R., Lo Monaco A., Mauromicale G., Faccioli P.,
RA Cattivelli L., Rieseberg L., Michelmore R., Lanteri S.;
RT "The genome sequence of the outbreeding globe artichoke constructed de novo
RT incorporating a phase-aware low-pass sequencing strategy of F1 progeny.";
RL Sci. Rep. 6:19427-19427(2016).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KVI03089.1}.
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DR EMBL; LEKV01002564; KVI03089.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A103Y5U6; -.
DR STRING; 59895.A0A103Y5U6; -.
DR EnsemblPlants; KVI03089; KVI03089; Ccrd_018618.
DR Gramene; KVI03089; KVI03089; Ccrd_018618.
DR OMA; CEEYFDW; -.
DR Proteomes; UP000243975; Unassembled WGS sequence.
DR GO; GO:0004518; F:nuclease activity; IEA:InterPro.
DR CDD; cd09869; PIN_GEN1; 1.
DR Gene3D; 3.40.50.1010; 5'-nuclease; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR029060; PIN-like_dom_sf.
DR InterPro; IPR006086; XPG-I_dom.
DR InterPro; IPR006084; XPG/Rad2.
DR InterPro; IPR006085; XPG_DNA_repair_N.
DR PANTHER; PTHR11081:SF54; FI23547P1; 1.
DR PANTHER; PTHR11081; FLAP ENDONUCLEASE FAMILY MEMBER; 1.
DR Pfam; PF00867; XPG_I; 1.
DR Pfam; PF00752; XPG_N; 1.
DR PRINTS; PR00853; XPGRADSUPER.
DR SMART; SM00484; XPGI; 1.
DR SMART; SM00485; XPGN; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF88723; PIN domain-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000243975}.
FT DOMAIN 1..97
FT /note="XPG N-terminal"
FT /evidence="ECO:0000259|SMART:SM00485"
FT DOMAIN 130..200
FT /note="XPG-I"
FT /evidence="ECO:0000259|SMART:SM00484"
FT REGION 393..413
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 527 AA; 59154 MW; 74526AEB41E59B3A CRC64;
MGVKNLWDIL ESCKKTLPLQ HLQNKRVCID LSCWMVQLHN VNKSHCSMKD KLYLKGLFHR
IRALIALNCS LIFVTDGSIP GIKVSTYRRR LHLNNEGTRE ESSLNKNASL QRNMGSEFSC
MIKEAKILGS ALGVPCLDGI EEGEAQCALL DSESLCDGCF SSDSDIFLFG ARTVYRDICL
GEGGYVVCYE MDDIKKKLGF GRNSLIVKSL GEAAVLQRIA SEELSLLKKA ICSKKRNQVL
GCNNKENIPP HESNGNGHKS NLPRNCEFLE VMDAYLKPKC HSADSQMQIC ARFFEWPPER
TDEYILPKIA ERDLRRFANL RFTSSHLGVR LPLDKIPVKC PVSGIVKRRK AQGKECFEVL
WEEVDGLTSS IVPGELVESA CPEKIVEFEE KIAEKKKPKP RKPRPKPSER NKSLSEIDVK
LQELVLEIEG ASSSAHTFRL LDEPMVNTRL NGAESLCAIE TEIVNLSTPL VVRKSKGKGE
TEIIDLSSPF PVNVIELSES ETDVSPEHMK KVRELRSFVA SIRDEFS
//
