ID A0A103YA73_CYNCS Unreviewed; 1208 AA.
AC A0A103YA73;
DT 13-APR-2016, integrated into UniProtKB/TrEMBL.
DT 13-APR-2016, sequence version 1.
DT 24-JAN-2024, entry version 25.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=Ccrd_016276 {ECO:0000313|EMBL:KVI05375.1};
OS Cynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae;
OC Carduinae; Cynara.
OX NCBI_TaxID=59895 {ECO:0000313|EMBL:KVI05375.1, ECO:0000313|Proteomes:UP000243975};
RN [1] {ECO:0000313|EMBL:KVI05375.1, ECO:0000313|Proteomes:UP000243975}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=2C {ECO:0000313|EMBL:KVI05375.1};
RX PubMed=26786968; DOI=10.1038/srep19427;
RA Scaglione D., Reyes-Chin-Wo S., Acquadro A., Froenicke L., Portis E.,
RA Beitel C., Tirone M., Mauro R., Lo Monaco A., Mauromicale G., Faccioli P.,
RA Cattivelli L., Rieseberg L., Michelmore R., Lanteri S.;
RT "The genome sequence of the outbreeding globe artichoke constructed de novo
RT incorporating a phase-aware low-pass sequencing strategy of F1 progeny.";
RL Sci. Rep. 6:19427-19427(2016).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC Evidence={ECO:0000256|ARBA:ARBA00001556};
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KVI05375.1}.
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DR EMBL; LEKV01001873; KVI05375.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A103YA73; -.
DR STRING; 59895.A0A103YA73; -.
DR EnsemblPlants; KVI05375; KVI05375; Ccrd_016276.
DR Gramene; KVI05375; KVI05375; Ccrd_016276.
DR OMA; KMWKMSK; -.
DR Proteomes; UP000243975; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR CDD; cd17917; DEXHc_RHA-like; 1.
DR CDD; cd18791; SF2_C_RHA; 1.
DR Gene3D; 1.20.120.1080; -; 1.
DR Gene3D; 3.30.160.20; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011709; DEAD-box_helicase_OB_fold.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014720; dsRBD_dom.
DR InterPro; IPR048333; HA2_WH.
DR InterPro; IPR007502; Helicase-assoc_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR PANTHER; PTHR18934; ATP-DEPENDENT RNA HELICASE; 1.
DR PANTHER; PTHR18934:SF146; DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00035; dsrm; 1.
DR Pfam; PF21010; HA2_C; 1.
DR Pfam; PF04408; HA2_N; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF07717; OB_NTP_bind; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00358; DSRM; 1.
DR SMART; SM00847; HA2; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF54768; dsRNA-binding domain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Helicase {ECO:0000313|EMBL:KVI05375.1};
KW Hydrolase {ECO:0000313|EMBL:KVI05375.1};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000243975}.
FT DOMAIN 312..479
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 566..740
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
SQ SEQUENCE 1208 AA; 135557 MW; 8C67CA73B0DC8B7B CRC64;
MQLLFLQYAT TFHFSCPKAL DKTSLSPPST AMKDIPRTSS YGSVYVPPHH RLRSVITSSA
SSPDISSTSR AVVANNSFVK SSHTNNNSLG TSYPYLPPNQ QHQKSQVHDV SEEVTYRGLD
PSIPTGASTS DMDSWKWRLT TLVHSKDEQE LVSREKKDRR DYDQIAALAT RMGLHSHLYA
KVLVVSKLPL PNYRFDLDDK RPQREVSVSQ GLQRRVDAHL REYLSHKARS MKGSQDNLFW
RTSSSGSIAT DEGLFEQPEV LPQSKAAMEK VLWRRSMQLQ TEQRAWQESS EGFKMLEFRR
SLPAYKEKDA ILNAISQNQV VIISGETGCG KTTQIPQFIL ESEINSGRGA TCSIICTQPR
RISAMSVSER IASERGEKLG ETVGYRVRLE GIKGRDTRLL FCTTGILLRK LLVDRNLKGV
THVLVDEIHE RGMNEDFLLI VLKELLPRRP ELRLILMSAT LDAELFSSYF GGVPLVQIPG
FTHPVHTYFL EDVLEKTGYR LTAENQIDDY GQDRTWKSNK QVIRKRKSQI ASAVEEALGS
ADFKEFSQQT QESMSCWNPD CIGFNLIEFL LCSMCENENP GAILVFMTGW DDISSLKDKL
QAHPLLGDPS RVLLLACHGS MGSSEQRLIF ERPEAGVRKI VLATNMAETS ITIDDVVFVI
DCGKAKETSY DALNNTPCLL PSWISKGSAK QRRGRAGRVQ PGECYHLYPR CVYDAFADYQ
LAEILRTPLQ SLCLQIKSLK LGSISEFLSK ALQSPELLAV QNAIEYLKII GALDESENLT
VLGRYLTMLP VEPKLGKMLI LGAILYCLDP ILTVVAGLSV RDPFLAPLDK KDLAEAAKAQ
FSCDYSDHLA LVRAYEGWKV AEYGLTGYEY CWKNFLSAQS MKAIDSLRRE FQSLLKDTGL
IDSNTPIYNT WSYDENLLRA VICYGLYPGI CSVVHNEKSF SLKTMEDGQV LLHSNSVNAR
DSKIPYPWLV FNEKIKVNSI FLRDSTAVSD SVLLLFGGSI LRGDIVSHLP PLFLEDGHLK
MLGGYLEFFM EPALAEMYQS LRRELDELFQ CKLMNPRMDL HTHHDLLSAV RLLLPGDQCN
GRFVFNHQVL YSNSKPYIAS VPPPPPLVSR VESGPGGDNS KSQLQTLLSR AGYAAPIYRT
NQLSNNQFRS ICEFNGMQIM GHPCHNKKQA EKDAAAEALE QLMGGKNAAR DSIDNLSMML
KKSKKNHN
//
