ID A0A103YGD0_CYNCS Unreviewed; 1090 AA.
AC A0A103YGD0;
DT 13-APR-2016, integrated into UniProtKB/TrEMBL.
DT 13-APR-2016, sequence version 1.
DT 24-JAN-2024, entry version 24.
DE SubName: Full=DNA repair protein Rad4 {ECO:0000313|EMBL:KVI08621.1};
GN ORFNames=Ccrd_013004 {ECO:0000313|EMBL:KVI08621.1};
OS Cynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae;
OC Carduinae; Cynara.
OX NCBI_TaxID=59895 {ECO:0000313|EMBL:KVI08621.1, ECO:0000313|Proteomes:UP000243975};
RN [1] {ECO:0000313|EMBL:KVI08621.1, ECO:0000313|Proteomes:UP000243975}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=2C {ECO:0000313|EMBL:KVI08621.1};
RX PubMed=26786968; DOI=10.1038/srep19427;
RA Scaglione D., Reyes-Chin-Wo S., Acquadro A., Froenicke L., Portis E.,
RA Beitel C., Tirone M., Mauro R., Lo Monaco A., Mauromicale G., Faccioli P.,
RA Cattivelli L., Rieseberg L., Michelmore R., Lanteri S.;
RT "The genome sequence of the outbreeding globe artichoke constructed de novo
RT incorporating a phase-aware low-pass sequencing strategy of F1 progeny.";
RL Sci. Rep. 6:19427-19427(2016).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the XPC family. {ECO:0000256|ARBA:ARBA00009525}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KVI08621.1}.
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DR EMBL; LEKV01001102; KVI08621.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A103YGD0; -.
DR STRING; 59895.A0A103YGD0; -.
DR EnsemblPlants; KVI08621; KVI08621; Ccrd_013004.
DR Gramene; KVI08621; KVI08621; Ccrd_013004.
DR OMA; FQAKHLG; -.
DR Proteomes; UP000243975; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:EnsemblPlants.
DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR GO; GO:0000724; P:double-strand break repair via homologous recombination; IEA:EnsemblPlants.
DR GO; GO:0006289; P:nucleotide-excision repair; IEA:EnsemblPlants.
DR GO; GO:0009650; P:UV protection; IEA:EnsemblPlants.
DR Gene3D; 2.20.20.110; Rad4, beta-hairpin domain BHD1; 1.
DR Gene3D; 3.30.70.2460; Rad4, beta-hairpin domain BHD3; 1.
DR Gene3D; 3.90.260.10; Transglutaminase-like; 2.
DR InterPro; IPR018327; BHD_2.
DR InterPro; IPR004583; DNA_repair_Rad4.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR018325; Rad4/PNGase_transGLS-fold.
DR InterPro; IPR018326; Rad4_beta-hairpin_dom1.
DR InterPro; IPR018328; Rad4_beta-hairpin_dom3.
DR InterPro; IPR042488; Rad4_BHD3_sf.
DR InterPro; IPR036985; Transglutaminase-like_sf.
DR PANTHER; PTHR12135:SF0; DNA REPAIR PROTEIN COMPLEMENTING XP-C CELLS; 1.
DR PANTHER; PTHR12135; DNA REPAIR PROTEIN XP-C / RAD4; 1.
DR Pfam; PF10403; BHD_1; 1.
DR Pfam; PF10404; BHD_2; 1.
DR Pfam; PF10405; BHD_3; 1.
DR Pfam; PF03835; Rad4; 1.
DR SMART; SM01030; BHD_1; 1.
DR SMART; SM01031; BHD_2; 1.
DR SMART; SM01032; BHD_3; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
PE 3: Inferred from homology;
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000243975}.
FT DOMAIN 766..817
FT /note="Rad4 beta-hairpin"
FT /evidence="ECO:0000259|SMART:SM01030"
FT DOMAIN 819..884
FT /note="Rad4 beta-hairpin"
FT /evidence="ECO:0000259|SMART:SM01031"
FT DOMAIN 891..965
FT /note="Rad4 beta-hairpin"
FT /evidence="ECO:0000259|SMART:SM01032"
FT REGION 1..24
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 92..179
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 462..519
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1037..1077
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 9..24
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 92..120
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 164..178
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 462..476
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1052..1077
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1090 AA; 121412 MW; 83F088CC1859C0B1 CRC64;
MKTRNQAKRQ RQSTGEDDLV SKSGHDTKAN ELWFEIINEK DFVKHPPICF TYRKRKVLHK
PREEWTSGTL ADTSEEAVNP FLKRVGSLGS RELKDDSASK LDNRPKGKEK QIKYDRHAQN
ISEVDGSSGH AKLENSIPLK ADGRSPQQAK SELEDVMADS DWEDGSNPNL NSESSHPGHI
NKDIAIEFDA SPGTSKRKSV RRASAEEKQV AELVHRTHLL CLLGRGRLID SACDDPLIQL
PLVGSNMKRP LILLAYDEAA PLASLLSLLP AELLNLLKVA DLTVDALGSL VNWFHINFHV
RSSSSDRSFH SALARALETH EGTPEESFQD SHSYFATITV LDSYWRNSTC RCFICGTVQS
IESFNTVRFS ARQLATFSMM VSLTHAVGKD VVSTILSVEM IIHCRLVASD SGFIDYPVVP
RFVSILDAAS LKPDADKSED MSQGRKVGKG VFDSSTVMVT QPSEASISSG KQSAPVDAEN
VASVDKKNAS EASAKASYQR KVKKSGRTIS QDTDSTTGDQ LNERRVDIFA CEAQNPTSDA
CAATTSEGSK RKGDVEFEMQ MEMALSATAV ETSKVNLDTD VKNSHSSISN FSPFKRSKKI
RCEESSSFSQ GISTAVGSRK VGAPMYWAEV YCSGDNSTGK WVHVDAVNAI IDGEQKVEAA
AAACKTSLRY VVAFAGRGAK DVTRRYCAKW YMIASHRVDS TWWDTVLRPL KELESRAIGG
TCRLSDKSSM SVIRGDVKKE EHASVSSFFF ATRTSLEDME LETKALTEPL PTNQQAYRSH
HLYALERWLT KYQILHPKGP ILGFCSGHPV YPRACVQMLH TKERWLREGL QLKVDELPVK
VLKRSVKLNK GKFPGDEDDE NDCVGPGGTI NLYGKWQTEP LRLLPAENGI VPKNERGQVD
LWSEKCLPPG TVHLGFPRIF AVAKKLEIDY APAMVGFEFR NGRSVPLYDG IVVCTEFKDT
ILEAYAEEEE RRGADERRKN EAQAISRWYQ LLSSIITRQR LNNRYAEGVS NDVQKTYDTF
HHHKSTNRED IQKPISHQAN EDDPSQPDAL PQPSEEDHEH VFLLNDPSSD DGSTRTKRCR
CGFSIEVEEF
//