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Database: UniProt
Entry: A0A103YGD0_CYNCS
LinkDB: A0A103YGD0_CYNCS
Original site: A0A103YGD0_CYNCS 
ID   A0A103YGD0_CYNCS        Unreviewed;      1090 AA.
AC   A0A103YGD0;
DT   13-APR-2016, integrated into UniProtKB/TrEMBL.
DT   13-APR-2016, sequence version 1.
DT   24-JAN-2024, entry version 24.
DE   SubName: Full=DNA repair protein Rad4 {ECO:0000313|EMBL:KVI08621.1};
GN   ORFNames=Ccrd_013004 {ECO:0000313|EMBL:KVI08621.1};
OS   Cynara cardunculus var. scolymus (Globe artichoke) (Cynara scolymus).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae;
OC   Carduinae; Cynara.
OX   NCBI_TaxID=59895 {ECO:0000313|EMBL:KVI08621.1, ECO:0000313|Proteomes:UP000243975};
RN   [1] {ECO:0000313|EMBL:KVI08621.1, ECO:0000313|Proteomes:UP000243975}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=2C {ECO:0000313|EMBL:KVI08621.1};
RX   PubMed=26786968; DOI=10.1038/srep19427;
RA   Scaglione D., Reyes-Chin-Wo S., Acquadro A., Froenicke L., Portis E.,
RA   Beitel C., Tirone M., Mauro R., Lo Monaco A., Mauromicale G., Faccioli P.,
RA   Cattivelli L., Rieseberg L., Michelmore R., Lanteri S.;
RT   "The genome sequence of the outbreeding globe artichoke constructed de novo
RT   incorporating a phase-aware low-pass sequencing strategy of F1 progeny.";
RL   Sci. Rep. 6:19427-19427(2016).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the XPC family. {ECO:0000256|ARBA:ARBA00009525}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KVI08621.1}.
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DR   EMBL; LEKV01001102; KVI08621.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A103YGD0; -.
DR   STRING; 59895.A0A103YGD0; -.
DR   EnsemblPlants; KVI08621; KVI08621; Ccrd_013004.
DR   Gramene; KVI08621; KVI08621; Ccrd_013004.
DR   OMA; FQAKHLG; -.
DR   Proteomes; UP000243975; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:EnsemblPlants.
DR   GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR   GO; GO:0000724; P:double-strand break repair via homologous recombination; IEA:EnsemblPlants.
DR   GO; GO:0006289; P:nucleotide-excision repair; IEA:EnsemblPlants.
DR   GO; GO:0009650; P:UV protection; IEA:EnsemblPlants.
DR   Gene3D; 2.20.20.110; Rad4, beta-hairpin domain BHD1; 1.
DR   Gene3D; 3.30.70.2460; Rad4, beta-hairpin domain BHD3; 1.
DR   Gene3D; 3.90.260.10; Transglutaminase-like; 2.
DR   InterPro; IPR018327; BHD_2.
DR   InterPro; IPR004583; DNA_repair_Rad4.
DR   InterPro; IPR038765; Papain-like_cys_pep_sf.
DR   InterPro; IPR018325; Rad4/PNGase_transGLS-fold.
DR   InterPro; IPR018326; Rad4_beta-hairpin_dom1.
DR   InterPro; IPR018328; Rad4_beta-hairpin_dom3.
DR   InterPro; IPR042488; Rad4_BHD3_sf.
DR   InterPro; IPR036985; Transglutaminase-like_sf.
DR   PANTHER; PTHR12135:SF0; DNA REPAIR PROTEIN COMPLEMENTING XP-C CELLS; 1.
DR   PANTHER; PTHR12135; DNA REPAIR PROTEIN XP-C / RAD4; 1.
DR   Pfam; PF10403; BHD_1; 1.
DR   Pfam; PF10404; BHD_2; 1.
DR   Pfam; PF10405; BHD_3; 1.
DR   Pfam; PF03835; Rad4; 1.
DR   SMART; SM01030; BHD_1; 1.
DR   SMART; SM01031; BHD_2; 1.
DR   SMART; SM01032; BHD_3; 1.
DR   SUPFAM; SSF54001; Cysteine proteinases; 1.
PE   3: Inferred from homology;
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000243975}.
FT   DOMAIN          766..817
FT                   /note="Rad4 beta-hairpin"
FT                   /evidence="ECO:0000259|SMART:SM01030"
FT   DOMAIN          819..884
FT                   /note="Rad4 beta-hairpin"
FT                   /evidence="ECO:0000259|SMART:SM01031"
FT   DOMAIN          891..965
FT                   /note="Rad4 beta-hairpin"
FT                   /evidence="ECO:0000259|SMART:SM01032"
FT   REGION          1..24
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          92..179
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          462..519
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1037..1077
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        9..24
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        92..120
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        164..178
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        462..476
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1052..1077
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1090 AA;  121412 MW;  83F088CC1859C0B1 CRC64;
     MKTRNQAKRQ RQSTGEDDLV SKSGHDTKAN ELWFEIINEK DFVKHPPICF TYRKRKVLHK
     PREEWTSGTL ADTSEEAVNP FLKRVGSLGS RELKDDSASK LDNRPKGKEK QIKYDRHAQN
     ISEVDGSSGH AKLENSIPLK ADGRSPQQAK SELEDVMADS DWEDGSNPNL NSESSHPGHI
     NKDIAIEFDA SPGTSKRKSV RRASAEEKQV AELVHRTHLL CLLGRGRLID SACDDPLIQL
     PLVGSNMKRP LILLAYDEAA PLASLLSLLP AELLNLLKVA DLTVDALGSL VNWFHINFHV
     RSSSSDRSFH SALARALETH EGTPEESFQD SHSYFATITV LDSYWRNSTC RCFICGTVQS
     IESFNTVRFS ARQLATFSMM VSLTHAVGKD VVSTILSVEM IIHCRLVASD SGFIDYPVVP
     RFVSILDAAS LKPDADKSED MSQGRKVGKG VFDSSTVMVT QPSEASISSG KQSAPVDAEN
     VASVDKKNAS EASAKASYQR KVKKSGRTIS QDTDSTTGDQ LNERRVDIFA CEAQNPTSDA
     CAATTSEGSK RKGDVEFEMQ MEMALSATAV ETSKVNLDTD VKNSHSSISN FSPFKRSKKI
     RCEESSSFSQ GISTAVGSRK VGAPMYWAEV YCSGDNSTGK WVHVDAVNAI IDGEQKVEAA
     AAACKTSLRY VVAFAGRGAK DVTRRYCAKW YMIASHRVDS TWWDTVLRPL KELESRAIGG
     TCRLSDKSSM SVIRGDVKKE EHASVSSFFF ATRTSLEDME LETKALTEPL PTNQQAYRSH
     HLYALERWLT KYQILHPKGP ILGFCSGHPV YPRACVQMLH TKERWLREGL QLKVDELPVK
     VLKRSVKLNK GKFPGDEDDE NDCVGPGGTI NLYGKWQTEP LRLLPAENGI VPKNERGQVD
     LWSEKCLPPG TVHLGFPRIF AVAKKLEIDY APAMVGFEFR NGRSVPLYDG IVVCTEFKDT
     ILEAYAEEEE RRGADERRKN EAQAISRWYQ LLSSIITRQR LNNRYAEGVS NDVQKTYDTF
     HHHKSTNRED IQKPISHQAN EDDPSQPDAL PQPSEEDHEH VFLLNDPSSD DGSTRTKRCR
     CGFSIEVEEF
//
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