UniProt: A0A108TCW4

Database: UniProt
Entry: A0A108TCW4_BACSE

LinkDB:  A0A108TCW4_BACSE 
Original site:  A0A108TCW4_BACSE

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Ontology (4)   
   GO (4)   
Gene (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (6)   
   EMBL (6)   
Protein domain (11)   
   InterPro (5)   
   Pfam (3)   
   PROSITE (2)   
   SMART (1)   
Literature (2)   
   PubMed (2)   
All databases (25)   

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ID   A0A108TCW4_BACSE        Unreviewed;       205 AA.
AC   A0A108TCW4;
DT   13-APR-2016, integrated into UniProtKB/TrEMBL.
DT   13-APR-2016, sequence version 1.
DT   27-MAR-2024, entry version 30.
DE   RecName: Full=Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017};
GN   Name=recR {ECO:0000256|HAMAP-Rule:MF_00017,
GN   ECO:0000313|EMBL:KWR57651.1};
GN   ORFNames=AA415_00186 {ECO:0000313|EMBL:KWR57651.1}, DW853_12580
GN   {ECO:0000313|EMBL:RHC28016.1}, DW889_00015
GN   {ECO:0000313|EMBL:RHB33481.1}, DWY58_17840
GN   {ECO:0000313|EMBL:RGR25386.1}, F9958_15840
GN   {ECO:0000313|EMBL:KAB5309920.1}, F9962_03640
GN   {ECO:0000313|EMBL:KAB5283176.1};
OS   Bacteroides stercoris.
OC   Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
OC   Bacteroides.
OX   NCBI_TaxID=46506 {ECO:0000313|EMBL:KWR57651.1, ECO:0000313|Proteomes:UP000056419};
RN   [1] {ECO:0000313|EMBL:KWR57651.1, ECO:0000313|Proteomes:UP000056419}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CL09T03C01 {ECO:0000313|EMBL:KWR57651.1,
RC   ECO:0000313|Proteomes:UP000056419};
RX   PubMed=26768901; DOI=10.1186/s12864-016-2377-z;
RA   Coyne M.J., Roelofs K.G., Comstock L.E.;
RT   "Type VI secretion systems of human gut Bacteroidales segregate into three
RT   genetic architectures, two of which are contained on mobile genetic
RT   elements.";
RL   BMC Genomics 17:58-58(2016).
RN   [2] {ECO:0000313|EMBL:KWR57651.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=CL09T03C01 {ECO:0000313|EMBL:KWR57651.1};
RA   McClelland M., Jain A., Saraogi P., Mendelson R., Westerman R.,
RA   SanMiguel P., Csonka L.;
RL   Submitted (JAN-2016) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|Proteomes:UP000283482, ECO:0000313|Proteomes:UP000284161}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AF25-6 {ECO:0000313|EMBL:RGR25386.1,
RC   ECO:0000313|Proteomes:UP000284161}, AM36-9BH
RC   {ECO:0000313|EMBL:RHC28016.1, ECO:0000313|Proteomes:UP000285305}, and
RC   AM40-34 {ECO:0000313|EMBL:RHB33481.1,
RC   ECO:0000313|Proteomes:UP000283482};
RA   Zou Y., Xue W., Luo G.;
RT   "A genome reference for cultivated species of the human gut microbiota.";
RL   Submitted (AUG-2018) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|Proteomes:UP000440773, ECO:0000313|Proteomes:UP000467334}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=BIOML-A17 {ECO:0000313|EMBL:KAB5283176.1,
RC   ECO:0000313|Proteomes:UP000440773}, and BIOML-A6
RC   {ECO:0000313|EMBL:KAB5309920.1, ECO:0000313|Proteomes:UP000467334};
RX   PubMed=31477907; DOI=.1038/s41591-019-0559-3;
RA   Poyet M., Groussin M., Gibbons S.M., Avila-Pacheco J., Jiang X.,
RA   Kearney S.M., Perrotta A.R., Berdy B., Zhao S., Lieberman T.D.,
RA   Swanson P.K., Smith M., Roesemann S., Alexander J.E., Rich S.A., Livny J.,
RA   Vlamakis H., Clish C., Bullock K., Deik A., Scott J., Pierce K.A.,
RA   Xavier R.J., Alm E.J.;
RT   "A library of human gut bacterial isolates paired with longitudinal
RT   multiomics data enables mechanistic microbiome research.";
RL   Nat. Med. 25:1442-1452(2019).
CC   -!- FUNCTION: May play a role in DNA repair. It seems to be involved in an
CC       RecBC-independent recombinational process of DNA repair. It may act
CC       with RecF and RecO. {ECO:0000256|HAMAP-Rule:MF_00017}.
CC   -!- SIMILARITY: Belongs to the RecR family. {ECO:0000256|HAMAP-
CC       Rule:MF_00017}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KWR57651.1}.
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DR   EMBL; WCLP01000007; KAB5283176.1; -; Genomic_DNA.
DR   EMBL; WCLE01000048; KAB5309920.1; -; Genomic_DNA.
DR   EMBL; LRGC01000001; KWR57651.1; -; Genomic_DNA.
DR   EMBL; QRUB01000035; RGR25386.1; -; Genomic_DNA.
DR   EMBL; QSGN01000001; RHB33481.1; -; Genomic_DNA.
DR   EMBL; QSHQ01000027; RHC28016.1; -; Genomic_DNA.
DR   RefSeq; WP_005653809.1; NZ_WCLU01000007.1.
DR   AlphaFoldDB; A0A108TCW4; -.
DR   STRING; 46506.AA415_00186; -.
DR   GeneID; 31796663; -.
DR   PATRIC; fig|46506.5.peg.200; -.
DR   Proteomes; UP000056419; Unassembled WGS sequence.
DR   Proteomes; UP000283482; Unassembled WGS sequence.
DR   Proteomes; UP000284161; Unassembled WGS sequence.
DR   Proteomes; UP000285305; Unassembled WGS sequence.
DR   Proteomes; UP000440773; Unassembled WGS sequence.
DR   Proteomes; UP000467334; Unassembled WGS sequence.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-UniRule.
DR   GO; GO:0006281; P:DNA repair; IEA:UniProtKB-UniRule.
DR   CDD; cd01025; TOPRIM_recR; 1.
DR   Gene3D; 3.30.60.80; -; 1.
DR   Gene3D; 3.40.1360.10; -; 1.
DR   Gene3D; 6.10.250.240; -; 1.
DR   Gene3D; 1.10.8.420; RecR Domain 1; 1.
DR   HAMAP; MF_00017; RecR; 1.
DR   InterPro; IPR000093; DNA_Rcmb_RecR.
DR   InterPro; IPR023627; Rcmb_RecR.
DR   InterPro; IPR015967; Rcmb_RecR_CS.
DR   InterPro; IPR006171; TOPRIM_domain.
DR   InterPro; IPR034137; TOPRIM_RecR.
DR   NCBIfam; TIGR00615; recR; 1.
DR   PANTHER; PTHR30446; RECOMBINATION PROTEIN RECR; 1.
DR   PANTHER; PTHR30446:SF0; RECOMBINATION PROTEIN RECR; 1.
DR   Pfam; PF21176; RecR_HhH; 1.
DR   Pfam; PF02132; RecR_ZnF; 1.
DR   Pfam; PF13662; Toprim_4; 1.
DR   SMART; SM00493; TOPRIM; 1.
DR   SUPFAM; SSF111304; Recombination protein RecR; 1.
DR   PROSITE; PS01300; RECR; 1.
DR   PROSITE; PS50880; TOPRIM; 1.
PE   3: Inferred from homology;
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763, ECO:0000256|HAMAP-
KW   Rule:MF_00017};
KW   DNA recombination {ECO:0000256|ARBA:ARBA00023172, ECO:0000256|HAMAP-
KW   Rule:MF_00017};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204, ECO:0000256|HAMAP-
KW   Rule:MF_00017};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723, ECO:0000256|HAMAP-
KW   Rule:MF_00017}; Reference proteome {ECO:0000313|Proteomes:UP000056419};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|HAMAP-Rule:MF_00017};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|HAMAP-
KW   Rule:MF_00017}.
FT   DOMAIN          83..178
FT                   /note="Toprim"
FT                   /evidence="ECO:0000259|PROSITE:PS50880"
FT   ZN_FING         60..75
FT                   /note="C4-type"
FT                   /evidence="ECO:0000256|HAMAP-Rule:MF_00017"
SQ   SEQUENCE   205 AA;  22361 MW;  72EDAF1584D09502 CRC64;
     MNGQYPSTLL EKAVNEFAKL PGIGRKTAMR LVLHLLRQDT AAVEAFGNAI VTLKHEVKYC
     KVCHNISDTE TCRICSNPQR DSSVICVVEN IRDVMAVEAT QQFRGLYHVL GGVISPMDGI
     GPGDLEIESL VQRVAAGGIK EVVFALSTTM EGDTTNFYIY RKLEKLGVKL SVIARGISVG
     DELEYADEVT LGRSIVNRTP FTGAV
//

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