ID A0A117KDY6_9FLAO Unreviewed; 486 AA.
AC A0A117KDY6;
DT 13-APR-2016, integrated into UniProtKB/TrEMBL.
DT 13-APR-2016, sequence version 1.
DT 24-JAN-2024, entry version 33.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:KUJ59791.1};
GN ORFNames=AR687_21545 {ECO:0000313|EMBL:KUJ59791.1};
OS Flavobacteriaceae bacterium CRH.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae.
OX NCBI_TaxID=1742859 {ECO:0000313|EMBL:KUJ59791.1, ECO:0000313|Proteomes:UP000053826};
RN [1] {ECO:0000313|EMBL:KUJ59791.1, ECO:0000313|Proteomes:UP000053826}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CRH {ECO:0000313|EMBL:KUJ59791.1,
RC ECO:0000313|Proteomes:UP000053826};
RA Newman J.D., Miller J.R., Jacobs K.T.;
RT "Genome Sequence of Flavobacterium sp. CHR.";
RL Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KUJ59791.1}.
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DR EMBL; LMAJ01000028; KUJ59791.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A117KDY6; -.
DR STRING; 1742859.AR687_21545; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000053826; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 112..304
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 326..485
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 486 AA; 56233 MW; 37D35734072E5B60 CRC64;
MLKQFLNLKL SQKLSPQQIQ LMKLIQLPTQ AFEQRLLEEM NENPALEAGK EDEYEADEFA
NEEYDDYDDA ESDRIEADDI NIDEYLSDDD TPDYKTQVNN YGEDEERETP FASPISFHQD
LINQLNTFIL NDEEREIAEF LVGSIDDMGY IRRTVADMVD DMAFTQGIYT DEVMVEKMLH
VIHELEPSGV GARDLQECLL LQLKHKTPTE YVDLAIDIIE NQFDAFTKKH YDKLLQKYGV
SNEQLKKAIH EIERLNPKPG GSFTGNNKVT ENVVPDFAIR ITDGELELTL NGRNAPSLHV
SKDYQEMMQT YKDSRDKSSA QKDAVQFIKQ KLDSAKWFID AIRQRQETLF VTMNAIMHYQ
EEFFLDGDET KLKPMILKDI ADMVGLDIST ISRVANSKYV ETPYGTKLIK EFFSEAMKND
QGEDVSTLEI KKILKNTIEE EDKKKPLPDD QLAEILKEKG YPIARRTIAK YREQLDIPVA
RMRKKI
//
