ID A0A126RK81_9SPHN Unreviewed; 467 AA.
AC A0A126RK81;
DT 11-MAY-2016, integrated into UniProtKB/TrEMBL.
DT 11-MAY-2016, sequence version 1.
DT 27-MAR-2024, entry version 35.
DE SubName: Full=XRE family transcriptional regulator {ECO:0000313|EMBL:AMK21985.1};
GN ORFNames=K426_05165 {ECO:0000313|EMBL:AMK21985.1};
OS Sphingobium sp. TKS.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC Sphingomonadaceae; Sphingobium.
OX NCBI_TaxID=1315974 {ECO:0000313|EMBL:AMK21985.1, ECO:0000313|Proteomes:UP000060779};
RN [1] {ECO:0000313|Proteomes:UP000060779}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TKS {ECO:0000313|Proteomes:UP000060779};
RA Tabata M.;
RT "Whole genome sequence of gamma-HCH degrading bacterium Sphingobium sp.
RT TKS.";
RL Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:AMK21985.1, ECO:0000313|Proteomes:UP000060779}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TKS {ECO:0000313|EMBL:AMK21985.1,
RC ECO:0000313|Proteomes:UP000060779};
RX PubMed=27056231;
RA Tabata M., Ohhata S., Kawasumi T., Nikawadori Y., Kishida K., Sato T.,
RA Ohtsubo Y., Tsuda M., Nagata Y.;
RT "Complete Genome Sequence of a gamma-Hexachlorocyclohexane Degrader,
RT Sphingobium sp. Strain TKS, Isolated from a gamma-Hexachlorocyclohexane-
RT Degrading Microbial Community.";
RL Genome Announc. 4:0-0(2016).
CC -!- SIMILARITY: Belongs to the short-chain fatty acyl-CoA assimilation
CC regulator (ScfR) family. {ECO:0000256|ARBA:ARBA00007227}.
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DR EMBL; CP005083; AMK21985.1; -; Genomic_DNA.
DR RefSeq; WP_066554588.1; NZ_CP005083.1.
DR AlphaFoldDB; A0A126RK81; -.
DR STRING; 1315974.K426_05165; -.
DR KEGG; spht:K426_05165; -.
DR PATRIC; fig|1315974.3.peg.1085; -.
DR OrthoDB; 1123084at2; -.
DR Proteomes; UP000060779; Chromosome 1.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00093; HTH_XRE; 1.
DR Gene3D; 1.10.260.40; lambda repressor-like DNA-binding domains; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR026281; HTH_RamB.
DR InterPro; IPR010359; IrrE_HExxH.
DR InterPro; IPR010982; Lambda_DNA-bd_dom_sf.
DR InterPro; IPR018653; ScfR_C.
DR PANTHER; PTHR46797; HTH-TYPE TRANSCRIPTIONAL REGULATOR; 1.
DR PANTHER; PTHR46797:SF23; HTH-TYPE TRANSCRIPTIONAL REGULATOR PRPR; 1.
DR Pfam; PF01381; HTH_3; 1.
DR Pfam; PF06114; Peptidase_M78; 1.
DR Pfam; PF09856; ScfRs; 1.
DR PIRSF; PIRSF019251; Rv0465c; 1.
DR SMART; SM00530; HTH_XRE; 1.
DR SUPFAM; SSF47413; lambda repressor-like DNA-binding domains; 1.
DR PROSITE; PS50943; HTH_CROC1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000060779};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 13..67
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 467 AA; 51332 MW; E001F55CE67331EB CRC64;
MADDRKLYLG PKLRVLRREL GLNQTRMAEE LGVSPSYLNH LERNQRPLTA QMLLRLANVY
DIDIRDFVAS TQEGAASALG EILSDALVRD IGIARDEVLE VAENYPGVSE AIGRFYRALS
DLRRLPEQVA AGPGSAAPLH APLDWLRETI SRAGNHFAEL DAAAESLAEE LGDDPSAMQA
GIRARLKERH GMAVQIVRED VLAGTLRHYD MHRRRLLLSE RLASSGRLFA VAYQLCAQEL
ADAIGSQVTR AGPPDEDSRR LAGIALTNYA AAALIMPYDR FAKAAEQSRH DLPLLRARFG
VSMEQLAHRL TSLGRTGARG VPFFMAKVDR AGQVSKRFDG EAWPFARLGG TCPRWDAHES
QEPDAVRPQL IETMDGRRFV SLTIGLPMEG GARGRSAIAL GCEAKHGPRI VHADGIDVEK
GAATQVGPTC HLCERRNCPD RALPPVTRAL DLHGYERTVA PFPFRRV
//
