ID A0A143YW97_9LACT Unreviewed; 364 AA.
AC A0A143YW97;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE SubName: Full=Rna polymerase sigma factor 54 {ECO:0000313|EMBL:CZR00455.1};
GN ORFNames=TR210_1733 {ECO:0000313|EMBL:CZR00455.1};
OS Trichococcus ilyis.
OC Bacteria; Bacillota; Bacilli; Lactobacillales; Carnobacteriaceae;
OC Trichococcus.
OX NCBI_TaxID=640938 {ECO:0000313|EMBL:CZR00455.1, ECO:0000313|Proteomes:UP000076878};
RN [1] {ECO:0000313|EMBL:CZR00455.1, ECO:0000313|Proteomes:UP000076878}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Trichococcus_R210 {ECO:0000313|EMBL:CZR00455.1};
RA Wen L., He K., Yang H.;
RL Submitted (FEB-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
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DR EMBL; FJNB01000012; CZR00455.1; -; Genomic_DNA.
DR RefSeq; WP_068623121.1; NZ_FNYT01000012.1.
DR AlphaFoldDB; A0A143YW97; -.
DR STRING; 640938.TR210_1733; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000076878; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 76..263
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 277..361
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
SQ SEQUENCE 364 AA; 41786 MW; FB9330F885C41ACC CRC64;
MSDTVSKRMD KETFDESVIM AGYSNDELIA YLQQKALENP LIEVMINKEF DERAMREKTV
VYKPDKDDPM DMVSAMEQVS EEAPALDTYL MEQIYANMRD TPLRDLVLYL VAFVNPEGYV
TLDLNEAAEQ KGVEPIVMLD ALTLLQQLDP PGVGARNLQE CLMLQTERDE YAPEIAYYIL
ENHFASFSDR NWQEIADELD VDLFDVKVVF EYVQTLDPTP GSAFGEDSLS LIRPDLYLQL
VEGHPTVKYN EWASPVIVFQ KEYYEELKRH EDKEVQAFVE AKKAEGEQLR SALAFRKDLL
LRVGERICQL QKVFFLEGKD LEPLDVSRLA AELAVPVAIM REVLLDKMIE TDRGTFLLQH
LCGE
//
