ID   A0A147IK32_9SPHN        Unreviewed;       718 AA.
AC   A0A147IK32;
DT   08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT   08-JUN-2016, sequence version 1.
DT   27-MAR-2024, entry version 23.
DE   SubName: Full=Phytochrome {ECO:0000313|EMBL:KTT95108.1};
GN   ORFNames=NS355_16985 {ECO:0000313|EMBL:KTT95108.1};
OS   Sphingomonas yabuuchiae.
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales;
OC   Sphingomonadaceae; Sphingomonas.
OX   NCBI_TaxID=172044 {ECO:0000313|EMBL:KTT95108.1, ECO:0000313|Proteomes:UP000073923};
RN   [1] {ECO:0000313|EMBL:KTT95108.1, ECO:0000313|Proteomes:UP000073923}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NS355 {ECO:0000313|EMBL:KTT95108.1,
RC   ECO:0000313|Proteomes:UP000073923};
RX   PubMed=26793183;
RA   Midha S., Bansal K., Sharma S., Kumar N., Patil P.P., Chaudhry V.,
RA   Patil P.B.;
RT   "Genomic Resource of Rice Seed Associated Bacteria.";
RL   Front. Microbiol. 6:1551-1551(2016).
CC   -!- SIMILARITY: In the N-terminal section; belongs to the phytochrome
CC       family. {ECO:0000256|ARBA:ARBA00006402}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KTT95108.1}.
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DR   EMBL; LDTF01000114; KTT95108.1; -; Genomic_DNA.
DR   RefSeq; WP_058746755.1; NZ_LDTF01000114.1.
DR   AlphaFoldDB; A0A147IK32; -.
DR   PATRIC; fig|172044.3.peg.312; -.
DR   OrthoDB; 9760752at2; -.
DR   Proteomes; UP000073923; Unassembled WGS sequence.
DR   GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR   GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd16936; HATPase_RsbW-like; 1.
DR   Gene3D; 3.30.450.270; -; 1.
DR   Gene3D; 3.30.450.40; -; 1.
DR   Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR   Gene3D; 3.30.450.20; PAS domain; 2.
DR   InterPro; IPR003018; GAF.
DR   InterPro; IPR029016; GAF-like_dom_sf.
DR   InterPro; IPR003594; HATPase_C.
DR   InterPro; IPR036890; HATPase_C_sf.
DR   InterPro; IPR005467; His_kinase_dom.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013654; PAS_2.
DR   InterPro; IPR016132; Phyto_chromo_attachment.
DR   InterPro; IPR001294; Phytochrome.
DR   InterPro; IPR013515; Phytochrome_cen-reg.
DR   InterPro; IPR043150; Phytochrome_PHY_sf.
DR   InterPro; IPR011495; Sig_transdc_His_kin_sub2_dim/P.
DR   PANTHER; PTHR41523:SF7; ETHYLENE RESPONSE SENSOR PROTEIN; 1.
DR   PANTHER; PTHR41523; TWO-COMPONENT SYSTEM SENSOR PROTEIN; 1.
DR   Pfam; PF01590; GAF; 1.
DR   Pfam; PF13581; HATPase_c_2; 1.
DR   Pfam; PF07568; HisKA_2; 1.
DR   Pfam; PF08446; PAS_2; 1.
DR   Pfam; PF00360; PHY; 1.
DR   PRINTS; PR01033; PHYTOCHROME.
DR   SMART; SM00065; GAF; 1.
DR   SMART; SM00387; HATPase_c; 1.
DR   SUPFAM; SSF55874; ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase; 1.
DR   SUPFAM; SSF55781; GAF domain-like; 2.
DR   SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR   PROSITE; PS50109; HIS_KIN; 1.
DR   PROSITE; PS50046; PHYTOCHROME_2; 1.
PE   3: Inferred from homology;
KW   Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW   Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW   Receptor {ECO:0000256|ARBA:ARBA00022543};
KW   Sensory transduction {ECO:0000256|ARBA:ARBA00022606}.
FT   DOMAIN          145..288
FT                   /note="Phytochrome chromophore attachment site"
FT                   /evidence="ECO:0000259|PROSITE:PS50046"
FT   DOMAIN          527..718
FT                   /note="Histidine kinase"
FT                   /evidence="ECO:0000259|PROSITE:PS50109"
SQ   SEQUENCE   718 AA;  78503 MW;  7E5BB78BE553D188 CRC64;
     MATRSVATDP NLDITACDRE PIHIPGAVQP HGLLLVADAT TLEVIAGAGP IEERLAPDWL
     GRPLAALLGD EVAQMVSDMP IGPGTTVAAV PVEGISERFS VTAHRVAGER ILIELEAGST
     DAPWGKGSPL NWIDAAVTSF ERTADLPMLF ERTATTFQML TGFDRVMLYR FLDEDAGRVV
     AEARSADLQS FLHHHFPASD IPKQARALYV RNRTRSIPDV DYVPAPIRPE GFETLDLSDV
     GLRSVSPIHV RYLKNMGVAA SASISIVKDG VLWGMIACHH YTPRRLSPDL RAAAAGLASA
     LARQIRAKEE AELYRERLRL RAAEDSLLPR IIGMGDLVPA MRRLMPEMMA MMSATGFAVV
     DQGKVHTHGT CPHDLAIPEI ASWAVIRGAG DLFFTHELPA QMPGAASLAA TAAGVLALPL
     VDGGVTLLWF RAEHVEEVEW AGNPHKSVAL TPDATLNPRT SFESWRETVR GRSRRWTMEE
     VEAGHRLRRA LHDAAQNHRL RGLNTALQRT LDDKEALLLQ KDVLMKEVDH RVQNSLQLVS
     SFLSLQAKAA DDPRVREQLA EAQARLSAVA LVHRRLYRDD QIQTVDLARY LEDLVGDMKQ
     SLGRDWAAMM RLDLAPVLMP TDRAINLGLV TTELIINATK YAYGGAVGPV TITLEQYGNR
     LRLIVADQGR GKGDEEPGQG RGFGSRMMAA MMQRLSGSIE YDGNQPGLRA IVVAPIAD
//