ID A0A151LYR4_ALLMI Unreviewed; 378 AA.
AC A0A151LYR4;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 24-JAN-2024, entry version 23.
DE RecName: Full=Zinc-finger CCCH domain-containing protein {ECO:0000259|Pfam:PF15663};
GN ORFNames=Y1Q_0020013 {ECO:0000313|EMBL:KYO17383.1};
OS Alligator mississippiensis (American alligator).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae;
OC Alligator.
OX NCBI_TaxID=8496 {ECO:0000313|EMBL:KYO17383.1};
RN [1] {ECO:0000313|EMBL:KYO17383.1, ECO:0000313|Proteomes:UP000050525}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KSC_2009_1 {ECO:0000313|EMBL:KYO17383.1};
RX PubMed=22293439; DOI=10.1186/gb-2012-13-1-415;
RA St John J.A., Braun E.L., Isberg S.R., Miles L.G., Chong A.Y., Gongora J.,
RA Dalzell P., Moran C., Bed'hom B., Abzhanov A., Burgess S.C., Cooksey A.M.,
RA Castoe T.A., Crawford N.G., Densmore L.D., Drew J.C., Edwards S.V.,
RA Faircloth B.C., Fujita M.K., Greenwold M.J., Hoffmann F.G., Howard J.M.,
RA Iguchi T., Janes D.E., Khan S.Y., Kohno S., de Koning A.J., Lance S.L.,
RA McCarthy F.M., McCormack J.E., Merchant M.E., Peterson D.G., Pollock D.D.,
RA Pourmand N., Raney B.J., Roessler K.A., Sanford J.R., Sawyer R.H.,
RA Schmidt C.J., Triplett E.W., Tuberville T.D., Venegas-Anaya M.,
RA Howard J.T., Jarvis E.D., Guillette L.J.Jr., Glenn T.C., Green R.E.,
RA Ray D.A.;
RT "Sequencing three crocodilian genomes to illuminate the evolution of
RT archosaurs and amniotes.";
RL Genome Biol. 13:415-415(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KYO17383.1}.
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DR EMBL; AKHW03007000; KYO17383.1; -; Genomic_DNA.
DR RefSeq; XP_006275105.1; XM_006275043.2.
DR RefSeq; XP_014466386.1; XM_014610900.2.
DR RefSeq; XP_019336437.1; XM_019480892.1.
DR AlphaFoldDB; A0A151LYR4; -.
DR STRING; 8496.A0A151LYR4; -.
DR GeneID; 102565399; -.
DR KEGG; amj:102565399; -.
DR CTD; 100354679; -.
DR eggNOG; KOG4791; Eukaryota.
DR OrthoDB; 5318860at2759; -.
DR PhylomeDB; A0A151LYR4; -.
DR Proteomes; UP000050525; Unassembled WGS sequence.
DR InterPro; IPR040943; DUF5571.
DR InterPro; IPR041686; Znf-CCCH_3.
DR Pfam; PF17732; DUF5571; 2.
DR Pfam; PF15663; zf-CCCH_3; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000050525}.
FT DOMAIN 1..51
FT /note="Zinc-finger CCCH"
FT /evidence="ECO:0000259|Pfam:PF15663"
FT REGION 50..73
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 262..285
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 348..378
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 50..70
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 359..378
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 378 AA; 42533 MW; 8D02D87FD75BD094 CRC64;
MEIKQKYTNI SCFWETQPLG CVRISCVFHH SKPRNINGLF LPPSSNVTHR QDFQESTLHP
SLSQEPLKGQ ESTLRPIHPP LIINISLEEE EEEEQEENCI SNLLTKTPAD IEEERAIREI
CYKSGEYYRI QTPQENYSVK IMSSALQIEL LKPMETGRDL QEGDGVSVPA KFHNIKRQGE
IIVSLNGNTR TDLGSFENGG GDCYVPQRNR VGGGKKNEAL NGGKQLIISK PSDIKGMNYT
EPVKKHHFKG VKKKKWISEE SKNSSSTYLG KATHGSHSKS EANCQRSYQR QNFENASYIP
SLKASGRSTS FYSPESGRST NVTNSNVSFS KESKLNISTD KCTSASYNAP IWRKRSPHTK
AYSKSEKIHS EPRRSGSK
//
