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Database: UniProt
Entry: A0A151M2U3_ALLMI
LinkDB: A0A151M2U3_ALLMI
Original site: A0A151M2U3_ALLMI 
ID   A0A151M2U3_ALLMI        Unreviewed;      3203 AA.
AC   A0A151M2U3;
DT   08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT   08-JUN-2016, sequence version 1.
DT   24-JAN-2024, entry version 26.
DE   SubName: Full=Lysosomal-trafficking regulator isoform A {ECO:0000313|EMBL:KYO18829.1};
GN   Name=LYST {ECO:0000313|EMBL:KYO18829.1};
GN   ORFNames=Y1Q_0009244 {ECO:0000313|EMBL:KYO18829.1};
OS   Alligator mississippiensis (American alligator).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae;
OC   Alligator.
OX   NCBI_TaxID=8496 {ECO:0000313|EMBL:KYO18829.1};
RN   [1] {ECO:0000313|EMBL:KYO18829.1, ECO:0000313|Proteomes:UP000050525}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=KSC_2009_1 {ECO:0000313|EMBL:KYO18829.1};
RX   PubMed=22293439; DOI=10.1186/gb-2012-13-1-415;
RA   St John J.A., Braun E.L., Isberg S.R., Miles L.G., Chong A.Y., Gongora J.,
RA   Dalzell P., Moran C., Bed'hom B., Abzhanov A., Burgess S.C., Cooksey A.M.,
RA   Castoe T.A., Crawford N.G., Densmore L.D., Drew J.C., Edwards S.V.,
RA   Faircloth B.C., Fujita M.K., Greenwold M.J., Hoffmann F.G., Howard J.M.,
RA   Iguchi T., Janes D.E., Khan S.Y., Kohno S., de Koning A.J., Lance S.L.,
RA   McCarthy F.M., McCormack J.E., Merchant M.E., Peterson D.G., Pollock D.D.,
RA   Pourmand N., Raney B.J., Roessler K.A., Sanford J.R., Sawyer R.H.,
RA   Schmidt C.J., Triplett E.W., Tuberville T.D., Venegas-Anaya M.,
RA   Howard J.T., Jarvis E.D., Guillette L.J.Jr., Glenn T.C., Green R.E.,
RA   Ray D.A.;
RT   "Sequencing three crocodilian genomes to illuminate the evolution of
RT   archosaurs and amniotes.";
RL   Genome Biol. 13:415-415(2012).
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KYO18829.1}.
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DR   EMBL; AKHW03006780; KYO18829.1; -; Genomic_DNA.
DR   STRING; 8496.A0A151M2U3; -.
DR   eggNOG; KOG1786; Eukaryota.
DR   Proteomes; UP000050525; Unassembled WGS sequence.
DR   CDD; cd06071; Beach; 1.
DR   CDD; cd01201; PH_BEACH; 1.
DR   Gene3D; 1.10.1540.10; BEACH domain; 1.
DR   Gene3D; 2.30.29.30; Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB); 1.
DR   Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR   InterPro; IPR000409; BEACH_dom.
DR   InterPro; IPR036372; BEACH_dom_sf.
DR   InterPro; IPR023362; PH-BEACH_dom.
DR   InterPro; IPR011993; PH-like_dom_sf.
DR   InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR   InterPro; IPR019775; WD40_repeat_CS.
DR   InterPro; IPR036322; WD40_repeat_dom_sf.
DR   InterPro; IPR001680; WD40_rpt.
DR   PANTHER; PTHR13743; BEIGE/BEACH-RELATED; 1.
DR   PANTHER; PTHR13743:SF86; LYSOSOMAL-TRAFFICKING REGULATOR; 1.
DR   Pfam; PF02138; Beach; 1.
DR   Pfam; PF14844; PH_BEACH; 1.
DR   Pfam; PF00400; WD40; 2.
DR   SMART; SM01026; Beach; 1.
DR   SMART; SM00320; WD40; 5.
DR   SUPFAM; SSF81837; BEACH domain; 1.
DR   SUPFAM; SSF50729; PH domain-like; 1.
DR   SUPFAM; SSF50978; WD40 repeat-like; 1.
DR   PROSITE; PS50197; BEACH; 1.
DR   PROSITE; PS51783; PH_BEACH; 1.
DR   PROSITE; PS00678; WD_REPEATS_1; 1.
DR   PROSITE; PS50082; WD_REPEATS_2; 1.
DR   PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000050525};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW   ProRule:PRU00221}.
FT   DOMAIN          2411..2517
FT                   /note="BEACH-type PH"
FT                   /evidence="ECO:0000259|PROSITE:PS51783"
FT   DOMAIN          2522..2824
FT                   /note="BEACH"
FT                   /evidence="ECO:0000259|PROSITE:PS50197"
FT   REPEAT          3014..3048
FT                   /note="WD"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT   REGION          133..167
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          315..336
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          578..606
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          621..655
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1597..1630
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        133..152
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        591..606
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1608..1630
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   3203 AA;  361516 MW;  5DF6829DDFDFA85C CRC64;
     MGTSGREAQF EALVSDMSSA SNSLAREFLT DVNRLCNAVV QRAEAREEEE EETHMAVLGQ
     YLVQGRGFNL LTMLNSIIDQ ELTCREELLT LLLSLLPLVW KIPVQEEKAI AGFNLPFTVD
     VYLTKETNSG SLKSTQEKIS LEGNSPPSLQ PSGKIYPFSR KSRRQRKTTH RYSEVLQIYL
     QTLPALFKSR VIRDLFLSCN GVNQMTELNY LDSVRVHSLK VFETLIFCLG DQQKDQAMPE
     LEGLDSEKKE STLDPPASLC SQQIVSVPPS LSKFYAGLKG AYPKKKKSIS QDVHVNTINL
     FLCVAFLCVS KEADSDRDSA NDSEDTSGYD STASEPLSHK LPCLSLESLV LPSPEHIHRA
     ADIWAMCRWI YLYSSVFQRQ FHRLGGFEVC HKLLIMIIQK LSKNKEKQQE KKEGLFTENG
     KNVNGSPRIE PVFKEALSHV TKKNKLASSE VHSLVENSEA TRPLVSEHIS NDHSFSVEQI
     SGTPVHPELD ASERRENEWA FQSIRLLEAL LTICLHSVNN MQQKLEMETL HQNMCVEDIL
     LEIRDQLTQA KVVETDLAKP LFDSLLRVAL GNFSADLDNS EEKTEKGQQA EKESVPQSGD
     LSEETEESQC CSLKLFVEEE GYEADSESNP DDSETKDEGA DTKSEAGYTG PSSYSSDLIE
     SLNQGELIYP EICLLELNLL LAGNPSLDVL AHVFESFLKI IRQKEKNASL LMHQGVVKNL
     LGGFLNILTQ SDSNLYECQV VLVDLLDSLM SSRTSSEELT LLLRIFLEKT PCTEILLQGI
     LKIVEANIYV SPLQYLTFPL LHIPNLSNSS SQKSASVLNS KAIGLLKRGK LSQSKKEADG
     ENLTHQLLSS WHVAPIHLPL VGQNCWPHMS EGFSISLWFN VEHVQEMESP TEKGKKTKKR
     SKPLILQDSN FDSSEESKPV GFENLSLRDK LVEDGCIHIV SLGSKALMIQ VWADLNTGAF
     IFRMCIDPND EMKAGLLAQA ESPENVFRIG KWQHLVLTYL QQPEGKKNIH GKLSLWVSGQ
     RKPDIGLDYA LPRKTGLSSD SNKTFCMLGH CTSSQEEMFR LAGKWHLGNL LLFNGAKIGP
     EEAFYLYACG PDFTSVMPCK YGKTSFDYSK YISKEILQCE EIKEFFMTKK EVDVGPLIES
     LAVVYTTCCP AQYTIYEPVI RLKSQVKSVP TQRPFSSKEV QSNELDSHHL KMLQPIECKT
     LQGILHEIGG TGAFIFLFAR VVEISDSEET QALSLQLILS LTKYNQQRIQ EMENCNGYSM
     IHQVLTKPKC IVGFRILKTL LEGCYSDEIL HINENGQFML DVDSSAVIQD VKLLEKLLLD
     WKIWSKAQQG VWETLLVTLE ILIRADHHQQ MFNIKQLLKA QVVHRFLLTC QVLQEHKEGH
     LASLPREVCR SFVKIIEEVL GSPPDLELLT LIFSFLLAVH PPTNTYVCHN PTNFYFSLHI
     DGKIFQEKVQ SIMYLRNFSS GGKPVECSAF EVTSPAGFTA ALPEGGIASK VSVPQLIGSQ
     VQERRCKSLP ASPTSSPHVH PKRLTGSLGK NIDHLLEAGG GRTNLQEKIT LMESSETLKR
     VQEELFISSC ESAKTVCDSE LTSAEILVDI PKEEELSANA SESKGANADL KPNEDAGDTE
     STLRRPDHLK GLPSFQKSQS NFPGLGLAFS AHSGPSTMSR WPSLTDKNVP PEDWEGLNFS
     SVSEQTLKKS ESLDDRSTED FLVLICCGLY DLLRGVLLIL PDIMLEDVMD KFIQPDTLIV
     LVNHPSPLIQ QGVIKFLDAY FNRATREQKE KFLKNRGFSL LANQLYLHQG TQEVVECFLE
     MLFGRSLGLD EEFDLEDVKN AGLFQKWCII PVLGLIENSL YDNVLLHNSF CLLLQIINSC
     SKVADMLLDN GLLYVLCNTL AALNGLEHNI PLNDYKLLAC NIQQLLVAVT IHACSSSGSQ
     YFRVVEDLLV LLGHLQNSNN ERTQNMAITL QFRVLHAAIE LIKTTANQDS QEQANSLHLP
     ATCHHAMLQK RKSIAGSRKL SIAQSDTLLM KMRSVASDEL NMMIQRRMSQ ENPVRATETE
     FVQRLQRLTV LAVNRLIYLE STQDCLYVLG APETTIQSRL SASHLEASEE EEQRELPNNT
     NPFLKEMIKI LIEGIKVSIS TSRMSTPRHQ WKRVLWSCKD TFRTQLGRLL VNVLSPARPL
     QERKLALDIV CETNHQEILR DCLSPTLHHG PKLALYLYEL MHDHKGELTE EEQESSRIFL
     DALKSCGYKS IPSTAPLKPD IIKAMKEDQK KYEAEEGVNK AAWEKTMTNN RQNLFQRLDA
     KSKDISKIAA DITQTVSLSQ GMERKKVIQH IRGIYKADLS ASRHWQELVQ QLTHDRALWY
     DPVYYPTSWQ LDPTEGPNRE RRRLQRCYLT IPNKYLLPDR QKQEEVIKPP LSYLFEDKTH
     SSHSSTVKDK AASEHIRVNR RCISVAPSRE TAGELLLGKC GMYFVQDNAS ETIENSSFHG
     ETEPASFSWT YEEIKEVHKR WWQLRDNAVE IFLTNGRTLL LAFDNTKVRD DVYHNILTNN
     LPNLLEYGNI TALTHLWYTG QITNFEYLTH LNKHAGRSFN DLMQYPVFPF ILSDYTNETL
     DLNDPSVYRN LVKPIAVQSK EKEDRYVDTY KYLEEEYRKG AREDDPMPPV QPYHYGSHYS
     NSGTVLHFLV RLPPFTKMFL AYQDQSFDIP DRTFHSTNTT WRLSSYESMT DVKELIPEFF
     YLPEFLVNRE GFDFGVRQNG ERVNHVNLPP WARNDPRLFI LIHRQTLESD HVSQTICHWI
     DLVFGYKQKG KASVQAINVF HPATYFGMDV SAVEDPVQRR ALETMIKTYG QTPRQLFYTA
     HISRPGSRLI MEGELPAAMG LLVQFAFRET REHTKEIVYP SPLPWIKGLK WGEYVGSPSA
     PDPVVCFSQP HGERFGSLQA LPTRAICGLS RKFCLLMIYS KEQGVRSMHS TDIQWSAILS
     WGYADNILRL KSKQSEPPVN FIQSSQFHQV TSCAWVPDSC QLFTGSKSGV ITAYVNKFTS
     STPSEIEVES QVHLYGHTAE ITSLFVCKPY SIMISVSKDG TCIIWDLNRL CYVQSLAGHK
     SPVTAVSASE TTGDIATVCD SVGGGSDLRL WTVNGDLVGH VHCRESICSV AFSNQPEGVS
     VNVIAGGLEN GVVRLWSTWD LKPVREITFS KSNKPIVSLT FSCDGHHLYT ANSDGNVIAW
     CRKDQQRLKL PMFYSFLSNY AAG
//
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