ID A0A151MVZ6_ALLMI Unreviewed; 358 AA.
AC A0A151MVZ6;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 27-MAR-2024, entry version 15.
DE RecName: Full=SCAN box domain-containing protein {ECO:0000259|PROSITE:PS50804};
GN ORFNames=Y1Q_0000833 {ECO:0000313|EMBL:KYO28670.1};
OS Alligator mississippiensis (American alligator).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae;
OC Alligator.
OX NCBI_TaxID=8496 {ECO:0000313|EMBL:KYO28670.1};
RN [1] {ECO:0000313|EMBL:KYO28670.1, ECO:0000313|Proteomes:UP000050525}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KSC_2009_1 {ECO:0000313|EMBL:KYO28670.1};
RX PubMed=22293439; DOI=10.1186/gb-2012-13-1-415;
RA St John J.A., Braun E.L., Isberg S.R., Miles L.G., Chong A.Y., Gongora J.,
RA Dalzell P., Moran C., Bed'hom B., Abzhanov A., Burgess S.C., Cooksey A.M.,
RA Castoe T.A., Crawford N.G., Densmore L.D., Drew J.C., Edwards S.V.,
RA Faircloth B.C., Fujita M.K., Greenwold M.J., Hoffmann F.G., Howard J.M.,
RA Iguchi T., Janes D.E., Khan S.Y., Kohno S., de Koning A.J., Lance S.L.,
RA McCarthy F.M., McCormack J.E., Merchant M.E., Peterson D.G., Pollock D.D.,
RA Pourmand N., Raney B.J., Roessler K.A., Sanford J.R., Sawyer R.H.,
RA Schmidt C.J., Triplett E.W., Tuberville T.D., Venegas-Anaya M.,
RA Howard J.T., Jarvis E.D., Guillette L.J.Jr., Glenn T.C., Green R.E.,
RA Ray D.A.;
RT "Sequencing three crocodilian genomes to illuminate the evolution of
RT archosaurs and amniotes.";
RL Genome Biol. 13:415-415(2012).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the krueppel C2H2-type zinc-finger protein
CC family. {ECO:0000256|ARBA:ARBA00006991}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KYO28670.1}.
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DR EMBL; AKHW03004838; KYO28670.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A151MVZ6; -.
DR STRING; 8496.A0A151MVZ6; -.
DR Proteomes; UP000050525; Unassembled WGS sequence.
DR CDD; cd07936; SCAN; 1.
DR Gene3D; 1.10.4020.10; DNA breaking-rejoining enzymes; 1.
DR InterPro; IPR003309; SCAN_dom.
DR InterPro; IPR038269; SCAN_sf.
DR PANTHER; PTHR45935; PROTEIN ZBED8-RELATED; 1.
DR PANTHER; PTHR45935:SF15; SCAN DOMAIN-CONTAINING PROTEIN 3; 1.
DR Pfam; PF02023; SCAN; 1.
DR SMART; SM00431; SCAN; 1.
DR SUPFAM; SSF47353; Retrovirus capsid dimerization domain-like; 1.
DR PROSITE; PS50804; SCAN_BOX; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000050525}.
FT DOMAIN 115..194
FT /note="SCAN box"
FT /evidence="ECO:0000259|PROSITE:PS50804"
SQ SEQUENCE 358 AA; 39369 MW; 70DC7FEAFD6B4E62 CRC64;
MAAELEPVAA VDLPWAALVQ TEVKMEKQDA GGLKAGAEGV GRVSRVIQAG AGGASLRRSA
PQHVTQQLKD EPVQQHEIQG QEVKQAMQTS FEAKLPLVTP QPALRDDLPN LETWRQRFRG
LCYQAAEGPR EVCSRLRELC RGWLEPQRRS KEQMLELVVL EQFLAVLPRE MQSWEWERGV
QTCAEAVTLA EGFQLGQAED KEIQGTVNVK VEAVSSVKTQ PTGALQQPVD GCLEQPKAHP
ADMLLEEAGQ RKIPGPQDKP LCIPKEEPLP DEELDFPKTK ETWELSGNES SSSRCPRRGL
SPEAARNICN SASNARRAWE CLPTHHTQVS AFRLPGLSLA ALVTCNPSAN CLPSSWIG
//
