ID A0A151NS44_ALLMI Unreviewed; 361 AA.
AC A0A151NS44;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 27-MAR-2024, entry version 18.
DE RecName: Full=SCAN box domain-containing protein {ECO:0000259|PROSITE:PS50804};
GN ORFNames=Y1Q_0021089 {ECO:0000313|EMBL:KYO39439.1};
OS Alligator mississippiensis (American alligator).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae;
OC Alligator.
OX NCBI_TaxID=8496 {ECO:0000313|EMBL:KYO39439.1};
RN [1] {ECO:0000313|EMBL:KYO39439.1, ECO:0000313|Proteomes:UP000050525}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KSC_2009_1 {ECO:0000313|EMBL:KYO39439.1};
RX PubMed=22293439; DOI=10.1186/gb-2012-13-1-415;
RA St John J.A., Braun E.L., Isberg S.R., Miles L.G., Chong A.Y., Gongora J.,
RA Dalzell P., Moran C., Bed'hom B., Abzhanov A., Burgess S.C., Cooksey A.M.,
RA Castoe T.A., Crawford N.G., Densmore L.D., Drew J.C., Edwards S.V.,
RA Faircloth B.C., Fujita M.K., Greenwold M.J., Hoffmann F.G., Howard J.M.,
RA Iguchi T., Janes D.E., Khan S.Y., Kohno S., de Koning A.J., Lance S.L.,
RA McCarthy F.M., McCormack J.E., Merchant M.E., Peterson D.G., Pollock D.D.,
RA Pourmand N., Raney B.J., Roessler K.A., Sanford J.R., Sawyer R.H.,
RA Schmidt C.J., Triplett E.W., Tuberville T.D., Venegas-Anaya M.,
RA Howard J.T., Jarvis E.D., Guillette L.J.Jr., Glenn T.C., Green R.E.,
RA Ray D.A.;
RT "Sequencing three crocodilian genomes to illuminate the evolution of
RT archosaurs and amniotes.";
RL Genome Biol. 13:415-415(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KYO39439.1}.
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DR EMBL; AKHW03002195; KYO39439.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A151NS44; -.
DR STRING; 8496.A0A151NS44; -.
DR Proteomes; UP000050525; Unassembled WGS sequence.
DR Gene3D; 1.10.4020.10; DNA breaking-rejoining enzymes; 1.
DR Gene3D; 1.10.720.30; SAP domain; 1.
DR InterPro; IPR036361; SAP_dom_sf.
DR InterPro; IPR003309; SCAN_dom.
DR InterPro; IPR038269; SCAN_sf.
DR PANTHER; PTHR46888:SF1; RIBONUCLEASE H; 1.
DR PANTHER; PTHR46888; ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED; 1.
DR Pfam; PF02023; SCAN; 1.
DR SUPFAM; SSF47353; Retrovirus capsid dimerization domain-like; 1.
DR PROSITE; PS50804; SCAN_BOX; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000050525}.
FT DOMAIN 270..318
FT /note="SCAN box"
FT /evidence="ECO:0000259|PROSITE:PS50804"
FT REGION 39..76
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 326..361
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 86..131
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 41..59
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 326..355
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 361 AA; 41371 MW; AB9B14966DBCB06D CRC64;
MADVYVQKTV PELKERGKER GLHVKKGLKK EELIKLLCDS DSATEPSSCT PTPESSPELH
PHTRSLEPSE GSPPVEGRWR YQIQLEAEGQ GSKRKYELEL KRLEQEAQHQ HEELELKRME
HEAREARLKR EHELAVIQMQ ANANTAGAQP AQDASSRLNT PIFSRYKDGD DPEVFLSIFK
NQACRWKLPK EEFMRHMVAL VEGDMSVVLN SLPSESADNY DAFKNAVSSR FKLGPDYFQK
KFRNIRPQPE QTMADFVALV WDALLKRADR AKAGNLEKVL YLMVLDQFYH CCLREIKTLV
KDGAPKTIQE AAEIVDQLLL NREGPDKKPL YFRKEQKGSK EAPKRGEERA RSRRGKKATS
C
//
