ID A0A151SU24_CAJCA Unreviewed; 382 AA.
AC A0A151SU24;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 03-MAY-2023, entry version 17.
DE RecName: Full=Transcription initiation factor IIF subunit alpha {ECO:0000256|RuleBase:RU366044};
GN ORFNames=KK1_004593 {ECO:0000313|EMBL:KYP58293.1};
OS Cajanus cajan (Pigeon pea) (Cajanus indicus).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Cajanus.
OX NCBI_TaxID=3821 {ECO:0000313|EMBL:KYP58293.1, ECO:0000313|Proteomes:UP000075243};
RN [1] {ECO:0000313|EMBL:KYP58293.1, ECO:0000313|Proteomes:UP000075243}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Asha {ECO:0000313|Proteomes:UP000075243};
RX PubMed=22057054; DOI=10.1038/nbt.2022;
RA Varshney R.K., Chen W., Li Y., Bharti A.K., Saxena R.K., Schlueter J.A.,
RA Donoghue M.T., Azam S., Fan G., Whaley A.M., Farmer A.D., Sheridan J.,
RA Iwata A., Tuteja R., Penmetsa R.V., Wu W., Upadhyaya H.D., Yang S.P.,
RA Shah T., Saxena K.B., Michael T., McCombie W.R., Yang B., Zhang G.,
RA Yang H., Wang J., Spillane C., Cook D.R., May G.D., Xu X., Jackson S.A.;
RT "Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop
RT of resource-poor farmers.";
RL Nat. Biotechnol. 30:83-89(2012).
CC -!- FUNCTION: TFIIF is a general transcription initiation factor that binds
CC to RNA polymerase II and helps to recruit it to the initiation complex
CC in collaboration with TFIIB. It promotes transcription elongation.
CC {ECO:0000256|RuleBase:RU366044}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU366044}.
CC -!- SIMILARITY: Belongs to the TFIIF alpha subunit family.
CC {ECO:0000256|RuleBase:RU366044}.
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DR EMBL; CM003613; KYP58293.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A151SU24; -.
DR STRING; 3821.A0A151SU24; -.
DR Proteomes; UP000075243; Chromosome 11.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0032968; P:positive regulation of transcription elongation by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR InterPro; IPR008851; TFIIF-alpha.
DR PANTHER; PTHR13011:SF0; GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 1; 1.
DR PANTHER; PTHR13011; TFIIF-ALPHA; 1.
DR Pfam; PF05793; TFIIF_alpha; 2.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|RuleBase:RU366044};
KW Nucleus {ECO:0000256|RuleBase:RU366044};
KW Reference proteome {ECO:0000313|Proteomes:UP000075243};
KW Transcription {ECO:0000256|RuleBase:RU366044};
KW Transcription regulation {ECO:0000256|RuleBase:RU366044}.
FT REGION 231..361
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 236..254
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 382 AA; 42248 MW; B1C8AE50DFC14A9C CRC64;
MSIDLLLKPS CGGCGSTTDL YESNSKHMTL CFTCVKTMAE NKAKCFDCGA TVTRLIREYS
VRASTGNGKN YFIGRFVSGL PDFSKKKSAE NKWCLQKDGL QSRQVTDAYG FKLRLRLRLR
SLLRWRLRWR WRSPLLSPLR SGLWELRILL SELQWLRCCC RCGQGGNSNI AAAIRVADWS
GKSSHLVFVT DLKLIVSKKS NFQDEDDEDE DNEEGGGLSK YGKELKKLLG RTSDLNESDD
EDDDDDDDDV DDDAGVPPVI AIKQKDATEE EPADNSPLKA AATGTARGTS KPSKGKRKLN
EETKASNGAP PKRVKTENEQ KSSVKDENGP ASKSNAPPKG VPPAPSSKVG SSSIASDKNA
FADIVKRISK RYRRLQIPTI LY
//
